Browse Element(s) Details


Os.19803.3.S1_at

Description gb:CB662157
DB_XREF= gi:29665882
DB_XREF=OSJNEd05O18.r
CLONE=OSJNEd05O18
TID=Os.19803.3
CNT=42
FEA=mRNA
TIER=Stack
STK=12
UG=Os.19803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H2B (P0009G03.33), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0599011/11Histone H2B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05940OsAffx.22770.2.S1_x_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.4.S1_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.3.S1_x_at2/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.1.S1_x_at1/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05950Os.19803.2.S1_at11/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05950OsAffx.10929.1.S1_x_at6/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05960Os.32822.1.S1_at11/111+2836736..2840314Leucine Rich Repeat family protein, expressed
LOC_Os01g05970OsAffx.10929.1.S1_x_at11/111+2841231..2845914Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os01g05980OsAffx.22770.1.S1_x_at11/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05980OsAffx.22770.3.S1_x_at1/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05990Os.19803.3.S1_at11/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g05990OsAffx.10929.1.S1_x_at7/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g06000OsAffx.10931.1.S1_at11/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.10931.3.S1_at2/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.24723.1.S1_at1/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06010Os.47037.1.S1_at11/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06010OsAffx.10929.1.S1_x_at6/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06020Os.24869.1.A1_at9/111+2874449..2879488Aspartyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19803.3.S1_at--199--1211Chr01:2854392..2854416 (25 bp)
AGTTCACTTCCTCTTAGGCTGCACC
LOC_Os01g05990
Os.19803.3.S1_at--752--9251Chr01:2854384..2854408 (25 bp)
TCCTCTTAGGCTGCACCTGGTGCTA
LOC_Os01g05990
Os.19803.3.S1_at--655--8331Chr01:2854376..2854400 (25 bp)
GGCTGCACCTGGTGCTATTGTGCTA
LOC_Os01g05990
Os.19803.3.S1_at--73--1771Chr01:2854370..2854394 (25 bp)
ACCTGGTGCTATTGTGCTAGTAGTA
LOC_Os01g05990
Os.19803.3.S1_at--1113--7771Chr01:2854366..2854390 (25 bp)
GGTGCTATTGTGCTAGTAGTAATAT
LOC_Os01g05990
Os.19803.3.S1_at--11--6871Chr01:2854339..2854363 (25 bp)
GTTTGATCTATTTATCTACTAGCTG
LOC_Os01g05990
Os.19803.3.S1_at--446--10351Chr01:2854329..2854353 (25 bp)
TTTATCTACTAGCTGTAGTGCATCA
LOC_Os01g05990
Os.19803.3.S1_at--843--7551Chr01:2854253..2854277 (25 bp)
GGGCTGCTTTTGAGGAACTTCTGTT
LOC_Os01g05990
Os.19803.3.S1_at--973--4751Chr01:2854251..2854275 (25 bp)
GCTGCTTTTGAGGAACTTCTGTTTC
LOC_Os01g05990
Os.19803.3.S1_at--1110--10731Chr01:2854244..2854268 (25 bp)
TTGAGGAACTTCTGTTTCATGGATT
LOC_Os01g05990
Os.19803.3.S1_at--256--7911Chr01:2854224..2854248 (25 bp)
GGATTCGAAATACACTAGTAATGCT
LOC_Os01g05990
Target Sequence 
AGTTCACTTCCTCTTAGGCTGCACCTGGTGCTATTGTGCTAGTAGTAATATTAGTTTGATCTATTTATCTACTAGCTGTA
GTGCATCAATGATGGGAAATGGATGTTGGGGATTTAGTGACTGTAAGAAGAATTAGGTGGGGCTGCTTTTGAGGAACTTC
TGTTTCATGGATTCGAAATACACTAGTAATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19803.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis