Browse Element(s) Details


OsAffx.22770.4.S1_at

Description tigr:9629.m00520
TID=OsAffx.22770.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0594011/11Leucine Rich Repeat family protein, expressed
LOC_Os01g056401/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05860OsAffx.23127.1.S1_at11/111+2802442..2804253pentatricopeptide, putative
LOC_Os01g05870Os.32577.1.S1_at11/111+2807115..2811819Leucine Rich Repeat family protein, expressed
LOC_Os01g05880OsAffx.10926.1.S1_at11/111+2811977..2813203F-box domain containing protein, expressed
LOC_Os01g05890OsAffx.22772.1.S1_at11/111+2814452..2815699F-box domain containing protein
LOC_Os01g05900Os.19803.5.S1_at11/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05900OsAffx.10929.1.S1_x_at6/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05910OsAffx.23128.1.S1_at10/111+2819284..2820179hypothetical protein
LOC_Os01g05920OsAffx.27060.1.S1_at11/111+2821821..2822267hypothetical protein
LOC_Os01g05930Os.45357.1.S1_at11/111+2822918..2825732SWIM zinc finger family protein, expressed
LOC_Os01g05940OsAffx.22770.2.S1_x_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.4.S1_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.3.S1_x_at2/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.1.S1_x_at1/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05950Os.19803.2.S1_at11/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05950OsAffx.10929.1.S1_x_at6/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05960Os.32822.1.S1_at11/111+2836736..2840314Leucine Rich Repeat family protein, expressed
LOC_Os01g05970OsAffx.10929.1.S1_x_at11/111+2841231..2845914Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os01g05980OsAffx.22770.1.S1_x_at11/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05980OsAffx.22770.3.S1_x_at1/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05990Os.19803.3.S1_at11/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g05990OsAffx.10929.1.S1_x_at7/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g06000OsAffx.10931.1.S1_at11/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.10931.3.S1_at2/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.24723.1.S1_at1/111+2857419..2864074pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22770.4.S1_at--121--3631Chr01:2831905..2832145 (25 bp)
CTTGATAGGCTAACCTGCTTGGCAA
LOC_Os01g05940
OsAffx.22770.4.S1_at--14--1071Chr01:2832188..2832212 (25 bp)
AGGGTGCAAGTGTAACCACGGCTGT
LOC_Os01g05940
OsAffx.22770.4.S1_at--1134--1931Chr01:2832205..2832229 (25 bp)
ACGGCTGTGAAAATGTTCAACCTTC
LOC_Os01g05940
OsAffx.22770.4.S1_at--806--2431Chr01:2832214..2832238 (25 bp)
AAAATGTTCAACCTTCAAATGTCAG
LOC_Os01g05940
OsAffx.22770.4.S1_at--1059--10491Chr01:2832227..2832251 (25 bp)
TTCAAATGTCAGGATCTTCAAGGAG
LOC_Os01g05940
OsAffx.22770.4.S1_at--1084--9592Chr01:2832371..2832572 (25 bp)
TCATGCCCAATGAAGACAAGAGTGC
LOC_Os01g05940
OsAffx.22770.4.S1_at--42--2271Chr01:2832599..2832623 (25 bp)
AAATCCTCCCAAACAGCACAACTAA
LOC_Os01g05940
OsAffx.22770.4.S1_at--707--131Chr01:2833066..2833090 (25 bp)
ATTCAACAGTGTTTAGTGGCTGTTC
LOC_Os01g05940
OsAffx.22770.4.S1_at--135--1091Chr01:2833080..2833104 (25 bp)
AGTGGCTGTTCTTAGGCTTGGCATA
LOC_Os01g05940
OsAffx.22770.4.S1_at--678--2611Chr01:2833121..2833145 (25 bp)
AACCCAGAGACCGAGTGCTCTTAGC
LOC_Os01g05940
OsAffx.22770.4.S1_at--256--6111Chr01:2833133..2833157 (25 bp)
GAGTGCTCTTAGCAGATGCTGTATC
LOC_Os01g05940
Target Sequence 
CTTGATAGGCTAACCTGCTTGGCAAAGGAAGATTATGGTTCTGTTAATAGATGTGCTTTAGAAGATGAGGGTGCAAGTGT
AACCACGGCTGTGAAAATGTTCAACCTTCAAATGTCAGGATCTTCAAGGAGCTTTGAGGCTGAATGTGAGGCTTTGAGAA
GAGTACGCCATCGTTGTCTCATAAAGATCATCACTTGTTGTTCGAGTATTGACCAACAGGGTCAAGAGTTCAAGGCACTG
GTGTTTGAGTTCATGCCCAATGAAGACAAGAGTGCAAAAGTTGGAGATTTAGGTATATCAAAAATCCTCCCAAACAGCAC
AACTAAAACTCTTCAAAATTCAAAAAGCTCAATTGGAATCAGAGGCTCCATTGGCTATATTGCACCAGAAGCAAATGAGA
CAGATGTGACAAATGCAAGCACAAAAAGAAGAATTATTCAACAGTGTTTAGTGGCTGTTCTTAGGCTTGGCATATCCTGC
TCAAAGCAACAACCCAGAGACCGAGTGCTCTTAGCAGATGCTGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22770.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis