Browse Element(s) Details


Os.45357.1.S1_at

Description gb:NM_184401.1
DB_XREF= gi:34895891
GEN=P0009G03.26
TID=Os.45357.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0009G03.26 (P0009G03.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0009G03.26 (P0009G03.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0593011/11SWIM zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05840Os.536.1.S1_at11/111+2797316..2800503oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g05850NANA1+2800581..2801646hypothetical protein
LOC_Os01g05860OsAffx.23127.1.S1_at11/111+2802442..2804253pentatricopeptide, putative
LOC_Os01g05870Os.32577.1.S1_at11/111+2807115..2811819Leucine Rich Repeat family protein, expressed
LOC_Os01g05880OsAffx.10926.1.S1_at11/111+2811977..2813203F-box domain containing protein, expressed
LOC_Os01g05890OsAffx.22772.1.S1_at11/111+2814452..2815699F-box domain containing protein
LOC_Os01g05900Os.19803.5.S1_at11/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05900OsAffx.10929.1.S1_x_at6/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05910OsAffx.23128.1.S1_at10/111+2819284..2820179hypothetical protein
LOC_Os01g05920OsAffx.27060.1.S1_at11/111+2821821..2822267hypothetical protein
LOC_Os01g05930Os.45357.1.S1_at11/111+2822918..2825732SWIM zinc finger family protein, expressed
LOC_Os01g05940OsAffx.22770.2.S1_x_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.4.S1_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.3.S1_x_at2/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.1.S1_x_at1/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05950Os.19803.2.S1_at11/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05950OsAffx.10929.1.S1_x_at6/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05960Os.32822.1.S1_at11/111+2836736..2840314Leucine Rich Repeat family protein, expressed
LOC_Os01g05970OsAffx.10929.1.S1_x_at11/111+2841231..2845914Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os01g05980OsAffx.22770.1.S1_x_at11/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05980OsAffx.22770.3.S1_x_at1/111+2847976..2852027Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45357.1.S1_at--874--671Chr01:2823402..2823426 (25 bp)
ATGACAAAGATGCTGCCTCTTCCAG
LOC_Os01g05930
Os.45357.1.S1_at--442--3311Chr01:2823365..2823389 (25 bp)
CACACTGCTCTACCATGCATGTATA
LOC_Os01g05930
Os.45357.1.S1_at--242--7771Chr01:2823325..2823349 (25 bp)
GGTGACATATCGGTTGATGCTTTCC
LOC_Os01g05930
Os.45357.1.S1_at--879--6331Chr01:2823310..2823334 (25 bp)
GATGCTTTCCACCTTGCTATGAAAC
LOC_Os01g05930
Os.45357.1.S1_at--380--5531Chr01:2823290..2823314 (25 bp)
GAAACATATAACTGACGCACTGGAT
LOC_Os01g05930
Os.45357.1.S1_at--453--1131Chr01:2823257..2823281 (25 bp)
ACTAGTGGCCGGTACCAACGAATCT
LOC_Os01g05930
Os.45357.1.S1_at--1099--5491Chr01:2823175..2823199 (25 bp)
GAACAAAATGAAGACCCCGCGGCTC
LOC_Os01g05930
Os.45357.1.S1_at--126--391Chr01:2823150..2823174 (25 bp)
ATCAGGCCGTACAAAGCTTGCCACT
LOC_Os01g05930
Os.45357.1.S1_at--158--1712Chr05:16558511..16558535 (25 bp)
ACCAGGCTGAAGTCCCCAGTAGATG
NONE
Os.45357.1.S1_at--631--2672Chr05:16558472..16558496 (25 bp)
AAGCGCATTTGTTCGAACTGTCATC
NONE
Os.45357.1.S1_at--120--8572Chr05:16558428..16558452 (25 bp)
TGGATGCCCCACAAATCCGGAGAAC
NONE
Target Sequence 
ATGACAAAGATGCTGCCTCTTCCAGGACACACCGCCACACACTGCTCTACCATGCATGTATAGACTTGTCCAAACAAGGT
GACATATCGGTTGATGCTTTCCACCTTGCTATGAAACATATAACTGACGCACTGGATGAGATTAAACTAGTGGCCGGTAC
CAACGAATCTCCCATGGGGTACACTGATCCCCCAAATGATGAACCTGCTGGACCGGATCAAGGAGGTGAACAAAATGAAG
ACCCCGCGGCTCATCAGGCCGTACAAAGCTTGCCACTGCCACCTGATCGTCGGGCAAAGCGTGGCCGACCTAGGTCCACC
AGGCTGAAGTCCCCAGTAGATGGTGGAGTCCGAAAAAAGCGCATTTGTTCGAACTGTCATCTGAAGGGGCACTATAGAAC
TGGATGCCCCACAAATCCGGAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis