Browse Element(s) Details


OsAffx.23128.1.S1_at

Description tigr:9629.m00517
TID=OsAffx.23128.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0591010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05840Os.536.1.S1_at11/111+2797316..2800503oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g05850NANA1+2800581..2801646hypothetical protein
LOC_Os01g05860OsAffx.23127.1.S1_at11/111+2802442..2804253pentatricopeptide, putative
LOC_Os01g05870Os.32577.1.S1_at11/111+2807115..2811819Leucine Rich Repeat family protein, expressed
LOC_Os01g05880OsAffx.10926.1.S1_at11/111+2811977..2813203F-box domain containing protein, expressed
LOC_Os01g05890OsAffx.22772.1.S1_at11/111+2814452..2815699F-box domain containing protein
LOC_Os01g05900Os.19803.5.S1_at11/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05900OsAffx.10929.1.S1_x_at6/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05910OsAffx.23128.1.S1_at10/111+2819284..2820179hypothetical protein
LOC_Os01g05920OsAffx.27060.1.S1_at11/111+2821821..2822267hypothetical protein
LOC_Os01g05930Os.45357.1.S1_at11/111+2822918..2825732SWIM zinc finger family protein, expressed
LOC_Os01g05940OsAffx.22770.2.S1_x_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.4.S1_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.3.S1_x_at2/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.1.S1_x_at1/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05950Os.19803.2.S1_at11/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05950OsAffx.10929.1.S1_x_at6/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05960Os.32822.1.S1_at11/111+2836736..2840314Leucine Rich Repeat family protein, expressed
LOC_Os01g05970OsAffx.10929.1.S1_x_at11/111+2841231..2845914Core histone H2A/H2B/H3/H4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23128.1.S1_at--982--3311Chr01:2819899..2819923 (25 bp)
CACTTAAGCTCACATAAGTTTTATT
LOC_Os01g05910
OsAffx.23128.1.S1_at--242--2811Chr01:2819884..2819908 (25 bp)
AAGTTTTATTTATCAATTATCAGGG
LOC_Os01g05910
OsAffx.23128.1.S1_at--845--4991Chr01:2819859..2819883 (25 bp)
GCATGTCTGAAGAGCAGGGTTTCAC
LOC_Os01g05910
OsAffx.23128.1.S1_at--763--5931Chr01:2819848..2819872 (25 bp)
GAGCAGGGTTTCACTTATTGCGCTG
LOC_Os01g05910
OsAffx.23128.1.S1_at--168--7691Chr01:2819843..2819867 (25 bp)
GGGTTTCACTTATTGCGCTGATTAT
LOC_Os01g05910
OsAffx.23128.1.S1_at--1139--51Chr01:2819832..2819856 (25 bp)
ATTGCGCTGATTATCACGCTTACCG
LOC_Os01g05910
OsAffx.23128.1.S1_at--467--6551Chr01:2819828..2819848 (21 bp)
GATTATCACGCTTACCGCGGGACAA
LOC_Os01g05910
OsAffx.23128.1.S1_at--795--4111NONE
CGCTTACCGCGGGACAATTATCGCG
NONE
OsAffx.23128.1.S1_at--1102--10133Chr03:4601820..4602261 (25 bp)
TATCGCGGTTATCGTGCTACCGCGA
NONE
OsAffx.23128.1.S1_at--240--9091Chr01:2819336..2819360 (25 bp)
TGCTACCGCGAGGTGGCGGTAACCT
LOC_Os01g05910
OsAffx.23128.1.S1_at--650--7831Chr01:2819319..2819343 (25 bp)
GGTAACCTCGGCCCAAACTCTGTTG
LOC_Os01g05910
Target Sequence 
CACTTAAGCTCACATAAGTTTTATTTATCAATTATCAGGGGCATGTCTGAAGAGCAGGGTTTCACTTATTGCGCTGATTA
TCACGCTTACCGCGGGACAATTATCGCGGTTATCGTGCTACCGCGAGGTGGCGGTAACCTCGGCCCAAACTCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis