Browse Element(s) Details


Os.19803.2.S1_at

Description gb:AK059159.1
DB_XREF= gi:32969177
TID=Os.19803.2
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H2B (P0009G03.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-D03, full insert sequence.
FL= gb:AK059159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0595011/11Histone H2B.3, putative, expressed
LOC_Os03g509001/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05870Os.32577.1.S1_at11/111+2807115..2811819Leucine Rich Repeat family protein, expressed
LOC_Os01g05880OsAffx.10926.1.S1_at11/111+2811977..2813203F-box domain containing protein, expressed
LOC_Os01g05890OsAffx.22772.1.S1_at11/111+2814452..2815699F-box domain containing protein
LOC_Os01g05900Os.19803.5.S1_at11/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05900OsAffx.10929.1.S1_x_at6/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05910OsAffx.23128.1.S1_at10/111+2819284..2820179hypothetical protein
LOC_Os01g05920OsAffx.27060.1.S1_at11/111+2821821..2822267hypothetical protein
LOC_Os01g05930Os.45357.1.S1_at11/111+2822918..2825732SWIM zinc finger family protein, expressed
LOC_Os01g05940OsAffx.22770.2.S1_x_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.4.S1_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.3.S1_x_at2/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.1.S1_x_at1/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05950Os.19803.2.S1_at11/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05950OsAffx.10929.1.S1_x_at6/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05960Os.32822.1.S1_at11/111+2836736..2840314Leucine Rich Repeat family protein, expressed
LOC_Os01g05970OsAffx.10929.1.S1_x_at11/111+2841231..2845914Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os01g05980OsAffx.22770.1.S1_x_at11/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05980OsAffx.22770.3.S1_x_at1/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05990Os.19803.3.S1_at11/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g05990OsAffx.10929.1.S1_x_at7/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g06000OsAffx.10931.1.S1_at11/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.10931.3.S1_at2/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.24723.1.S1_at1/111+2857419..2864074pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19803.2.S1_at--7--1231Chr01:2834840..2834864 (25 bp)
AGTTCACTTCCTCCTAGGCTGTACG
LOC_Os01g05950
Os.19803.2.S1_at--355--6991Chr01:2834820..2834844 (25 bp)
GTACGCCTGCATCTAGTCCTAGTAG
LOC_Os01g05950
Os.19803.2.S1_at--988--6611Chr01:2834722..2834746 (25 bp)
GTTGGTTTGGTAGTCATTGGCTGTA
LOC_Os01g05950
Os.19803.2.S1_at--789--5372Chr03:29027651..29027783 (24 bp)
GAAGAATGGCTTTGGGTTGCTTTTG
LOC_Os03g50900
Os.19803.2.S1_at--1058--8631Chr01:2834684..2834708 (25 bp)
TGGGTTGCTTTTGGGAAACACTTGC
LOC_Os01g05950
Os.19803.2.S1_at--710--7591Chr01:2834672..2834696 (25 bp)
GGGAAACACTTGCTTCACGGATCGG
LOC_Os01g05950
Os.19803.2.S1_at--1157--2051Chr01:2834665..2834689 (25 bp)
ACTTGCTTCACGGATCGGGCATAAG
LOC_Os01g05950
Os.19803.2.S1_at--1068--6391Chr01:2834653..2834677 (25 bp)
GATCGGGCATAAGTAACCATGCTTT
LOC_Os01g05950
Os.19803.2.S1_at--633--7051Chr01:2834641..2834665 (25 bp)
GTAACCATGCTTTTATAACATGCGA
LOC_Os01g05950
Os.19803.2.S1_at--185--2511Chr01:2834625..2834649 (25 bp)
AACATGCGAATGTGTGCTTTCTCTT
LOC_Os01g05950
Os.19803.2.S1_at--849--7311Chr01:2834612..2834636 (25 bp)
GTGCTTTCTCTTGTGCCATCATTGA
LOC_Os01g05950
Target Sequence 
AGTTCACTTCCTCCTAGGCTGTACGCCTGCATCTAGTCCTAGTAGTAATAGTAGTTTTTATATGTTTATGTGGTATATTG
TTTAAGTGATATCCAAGATTGGAAATGGATGTTAAATTGTTGGTTTGGTAGTCATTGGCTGTAAGAAGAATGGCTTTGGG
TTGCTTTTGGGAAACACTTGCTTCACGGATCGGGCATAAGTAACCATGCTTTTATAACATGCGAATGTGTGCTTTCTCTT
GTGCCATCATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19803.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis