Browse Element(s) Details


Os.47037.1.S1_at

Description gb:CB631324
DB_XREF= gi:29626313
DB_XREF=OSIIEb08M13.f
CLONE=OSIIEb08M13
TID=Os.47037.1
CNT=15
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.47037 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H2B (P0030H07.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0601011/11Histone H2B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05970OsAffx.10929.1.S1_x_at11/111+2841231..2845914Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os01g05980OsAffx.22770.1.S1_x_at11/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05980OsAffx.22770.3.S1_x_at1/111+2847976..2852027Leucine Rich Repeat family protein, expressed
LOC_Os01g05990Os.19803.3.S1_at11/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g05990OsAffx.10929.1.S1_x_at7/111+2854123..2854936Histone H2B, putative, expressed
LOC_Os01g06000OsAffx.10931.1.S1_at11/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.10931.3.S1_at2/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.24723.1.S1_at1/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06010Os.47037.1.S1_at11/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06010OsAffx.10929.1.S1_x_at6/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06020Os.24869.1.A1_at9/111+2874449..2879488Aspartyl-tRNA synthetase, putative, expressed
LOC_Os01g06030OsAffx.23131.2.S1_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06030OsAffx.23131.2.S1_x_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06040OsAffx.10932.1.S1_at11/111+2883862..2885236hypothetical protein
LOC_Os01g06050Os.54577.1.S1_at11/111+2889722..2891509expressed protein
LOC_Os01g06060Os.1899.1.S1_at9/111+2893487..2894867PrMC3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47037.1.S1_at--684--3631Chr01:2869479..2869503 (25 bp)
CTTGCTGCTAATGGTAGTTGTGGTA
LOC_Os01g06010
Os.47037.1.S1_at--259--10871Chr01:2869514..2869538 (25 bp)
TTGGATGGTATGGTACTGTGCTGTA
LOC_Os01g06010
Os.47037.1.S1_at--89--7011Chr01:2869526..2869550 (25 bp)
GTACTGTGCTGTAGTTATTCTGGCT
LOC_Os01g06010
Os.47037.1.S1_at--1077--9111Chr01:2869532..2869556 (25 bp)
TGCTGTAGTTATTCTGGCTTTTGAC
LOC_Os01g06010
Os.47037.1.S1_at--538--10211Chr01:2869541..2869565 (25 bp)
TATTCTGGCTTTTGACTATCTTGGG
LOC_Os01g06010
Os.47037.1.S1_at--449--8291Chr01:2869547..2869571 (25 bp)
GGCTTTTGACTATCTTGGGTTCATG
LOC_Os01g06010
Os.47037.1.S1_at--876--5691Chr01:2869554..2869578 (25 bp)
GACTATCTTGGGTTCATGTAAGAAA
LOC_Os01g06010
Os.47037.1.S1_at--500--9611Chr01:2869567..2869591 (25 bp)
TCATGTAAGAAATATCCTGGTGGAT
LOC_Os01g06010
Os.47037.1.S1_at--84--1411Chr01:2869574..2869598 (25 bp)
AGAAATATCCTGGTGGATTTAGGAC
LOC_Os01g06010
Os.47037.1.S1_at--560--8151Chr01:2869595..2869619 (25 bp)
GGACAATATTGTTATCTGGATCTGG
LOC_Os01g06010
Os.47037.1.S1_at--1151--10391Chr01:2869606..2869630 (25 bp)
TTATCTGGATCTGGTAAAGTAGTAA
LOC_Os01g06010
Target Sequence 
CTTGCTGCTAATGGTAGTTGTGGTAGGTTGGAATTTTGGATGGTATGGTACTGTGCTGTAGTTATTCTGGCTTTTGACTA
TCTTGGGTTCATGTAAGAAATATCCTGGTGGATTTAGGACAATATTGTTATCTGGATCTGGTAAAGTAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47037.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis