Browse Element(s) Details


OsAffx.23131.2.S1_x_at

Description tigr:9629.m00529
TID=OsAffx.23131.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0603011/11hypothetical protein
LOC_Os01g060701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06000OsAffx.10931.1.S1_at11/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.10931.3.S1_at2/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.24723.1.S1_at1/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06010Os.47037.1.S1_at11/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06010OsAffx.10929.1.S1_x_at6/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06020Os.24869.1.A1_at9/111+2874449..2879488Aspartyl-tRNA synthetase, putative, expressed
LOC_Os01g06030OsAffx.23131.2.S1_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06030OsAffx.23131.2.S1_x_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06040OsAffx.10932.1.S1_at11/111+2883862..2885236hypothetical protein
LOC_Os01g06050Os.54577.1.S1_at11/111+2889722..2891509expressed protein
LOC_Os01g06060Os.1899.1.S1_at9/111+2893487..2894867PrMC3, putative, expressed
LOC_Os01g06070OsAffx.23131.1.S1_at11/111+2895840..2896698hypothetical protein
LOC_Os01g06070OsAffx.23131.2.S1_x_at1/111+2895840..2896698hypothetical protein
LOC_Os01g06080OsAffx.10933.1.S1_s_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06080Os.55760.1.S1_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06090OsAffx.23132.1.S1_at11/111+2903854..2904722expressed protein
LOC_Os01g06090OsAffx.10933.1.S1_s_at2/111+2903854..2904722expressed protein
LOC_Os01g06100NANA1+2906883..2909309transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23131.2.S1_x_at--268--1611Chr01:2882366..2882390 (25 bp)
AGCTGCTCGGGAAGGACTCCATGGT
LOC_Os01g06030
OsAffx.23131.2.S1_x_at--71--4031Chr01:2882537..2882561 (25 bp)
CGTCTTCTTCGCAGCCCAAGAGCTT
LOC_Os01g06030
OsAffx.23131.2.S1_x_at--640--4771Chr01:2882573..2882597 (25 bp)
GCTCCTACGACTGTTTCTACTACGT
LOC_Os01g06030
OsAffx.23131.2.S1_x_at--659--5731Chr01:2882581..2882605 (25 bp)
GACTGTTTCTACTACGTGACGGACG
LOC_Os01g06030
OsAffx.23131.2.S1_x_at--305--1911Chr01:2882603..2882627 (25 bp)
ACGTGAGCGGCGTCAAGTGTCCGTC
LOC_Os01g06030
OsAffx.23131.2.S1_x_at--681--1091Chr01:2882618..2882642 (25 bp)
AGTGTCCGTCCTGCGGCAACCAGAT
LOC_Os01g06030
OsAffx.23131.2.S1_x_at--700--1291Chr01:2882639..2882663 (25 bp)
AGATGACAACGGCATGCACGTATGC
LOC_Os01g06030
OsAffx.23131.2.S1_x_at--326--3472Chr01:2882728..2882752 (25 bp)
CAGGGCATCGTGACGTACACGGTGA
LOC_Os01g06030
OsAffx.23131.2.S1_x_at--101--2471Chr01:2882806..2882830 (25 bp)
AACACGTTCGCCGTCAAGGACCTGG
LOC_Os01g06030
OsAffx.23131.2.S1_x_at--843--2911Chr01:2882839..2882863 (25 bp)
AAGGAGCAGACCGTGCAGCTCGGCT
LOC_Os01g06030
OsAffx.23131.2.S1_x_at--599--3211Chr01:2883049..2883073 (25 bp)
CAAGACCGTTCTCAGCGACGTTTTC
LOC_Os01g06030
Target Sequence 
AGCTGCTCGGGAAGGACTCCATGGTCGGCTGCGTCGGCAACCTCTACGCCAGCGTCGAGAAGCTCGACGGCACCTACGTC
CAGCCCGGCGCCTCCAAGAACGCGCTGCTCAGCCCCGTCGTGCTCTCGCCGGCGGCCAGCTCCAACACCTCCGTCCTCCG
CTTGCCGGCCCCGTCTTCTTCGCAGCCCAAGAGCTTCTTCAGCTGCCGCTCCTACGACTGTTTCTACTACGTGACGGACG
TGAGCGGCGTCAAGTGTCCGTCCTGCGGCAACCAGATGACAACGGCATGCACGTATGCCGCACCAACCGCTGCCCAGAAG
CTGCAGGCCGCTGCAGCCGAAGGGGCGGGGAAGGGGTTCGTGCAGGGCATCGTGACGTACACGGTGATGGACGACCTCAC
CGTGTCGCCCATGTCGTCCATCTCCAGCATCACGCTGCTCAACACGTTCGCCGTCAAGGACCTGGGCGCGCTCAAGGAGC
AGACCGTGCAGCTCGGCTACACTGAGGNNNTNNNNNNNCTGAGGGCCTCGCTGCAGTCCAAGACCGTTCTCAGCGACGTT
TTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23131.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis