Browse Element(s) Details


Os.55760.1.S1_at

Description gb:AK108752.1
DB_XREF= gi:32993961
TID=Os.55760.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-F07, full insert sequence.
FL= gb:AK108752.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0608011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06020Os.24869.1.A1_at9/111+2874449..2879488Aspartyl-tRNA synthetase, putative, expressed
LOC_Os01g06030OsAffx.23131.2.S1_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06030OsAffx.23131.2.S1_x_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06040OsAffx.10932.1.S1_at11/111+2883862..2885236hypothetical protein
LOC_Os01g06050Os.54577.1.S1_at11/111+2889722..2891509expressed protein
LOC_Os01g06060Os.1899.1.S1_at9/111+2893487..2894867PrMC3, putative, expressed
LOC_Os01g06070OsAffx.23131.1.S1_at11/111+2895840..2896698hypothetical protein
LOC_Os01g06070OsAffx.23131.2.S1_x_at1/111+2895840..2896698hypothetical protein
LOC_Os01g06080OsAffx.10933.1.S1_s_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06080Os.55760.1.S1_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06090OsAffx.23132.1.S1_at11/111+2903854..2904722expressed protein
LOC_Os01g06090OsAffx.10933.1.S1_s_at2/111+2903854..2904722expressed protein
LOC_Os01g06100NANA1+2906883..2909309transposon protein, putative, unclassified
LOC_Os01g06110NANA1+2909706..2912906transposon protein, putative, unclassified
LOC_Os01g06120OsAffx.1944.1.S1_at11/111+2917227..2918121hypothetical protein
LOC_Os01g06130Os.1904.1.S1_at11/111+2919445..2921819expressed protein
LOC_Os01g06130Os.31874.2.S1_x_at1/111+2919445..2921819expressed protein
LOC_Os01g06140Os.49713.1.S1_at11/111+2922737..2925567expressed protein
LOC_Os01g06140Os.31874.2.S1_x_at1/111+2922737..2925567expressed protein
LOC_Os01g06140Os.1904.1.S1_at1/111+2922737..2925567expressed protein
LOC_Os01g06140Os.31874.1.S1_at1/111+2922737..2925567expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55760.1.S1_at--882--8473Chr12:7127455..7127482 (24 bp)
TGGCGTTGAGCCGAGCTGATCCCCG
NONE
Os.55760.1.S1_at--751--8833Chr12:7127474..7127498 (25 bp)
TGATCCCCGCGGATGTAGCGACGGC
NONE
Os.55760.1.S1_at--439--7231Chr01:2900251..2900275 (25 bp)
GTCCCTACTCGTCTATATGAGGCAG
LOC_Os01g06080
Os.55760.1.S1_at--135--9411Chr01:2900243..2900267 (25 bp)
TCGTCTATATGAGGCAGCGCTAGCT
LOC_Os01g06080
Os.55760.1.S1_at--390--7091Chr01:2900183..2900207 (25 bp)
GTCAAGCTCCAGGACCAGCGCGGAG
LOC_Os01g06080
Os.55760.1.S1_at--434--3373Chr12:7127554..7127578 (25 bp)
CAGCGCGGAGGTATCCCCTATGGCG
NONE
Os.55760.1.S1_at--949--10091Chr01:2900150..2900174 (25 bp)
TATGGCGCTCTCTATCTCAGCGGGC
LOC_Os01g06080
Os.55760.1.S1_at--551--9951Chr01:2899973..2899997 (25 bp)
TACGCGACGGCATGGTGATTAGGAA
LOC_Os01g06080
Os.55760.1.S1_at--263--6891Chr01:2899937..2899961 (25 bp)
GTATATTGTTCTTGCTGGATTTTTT
LOC_Os01g06080
Os.55760.1.S1_at--865--6571Chr01:2899905..2899929 (25 bp)
GATTCTGGGTCTTTTTTCATATACT
LOC_Os01g06080
Os.55760.1.S1_at--454--10311Chr01:2899891..2899915 (25 bp)
TTTCATATACTCTGGACTGTTCTAG
LOC_Os01g06080
Target Sequence 
TGGCGTTGAGCCGAGCTGATCCCCGCGGATGTAGCGACGGCGTGGACCTCCGCCGCCGTCCCTACTCGTCTATATGAGGC
AGCGCTAGCTGGTGAGCAGGCGCGTATCAAGGCCCCGCGCGGGCCGTCAAGCTCCAGGACCAGCGCGGAGGTATCCCCTA
TGGCGCTCTCTATCTCAGCGGGCTCCCTCCAATGTCGTCTACAACTCCGTCGTCGGATCCTTCGCTTCCCCCGTATCGTC
TAGGCGCATCGTCGCCTCGCACGGATCAAGGCAGGGCGGGGCCAAGGAGCACCAGGTCAATCGAGCTCGAGCTCATCGTC
CCCGTATTTGCCATCTACGCGACGGCATGGTGATTAGGAAAGGGGAATACTGTATATTGTTCTTGCTGGATTTTTTTTTT
TTCTGATTCTGGGTCTTTTTTCATATACTCTGGACTGTTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis