Browse Element(s) Details


Os.1904.1.S1_at

Description gb:C98965
DB_XREF= gi:3761717
DB_XREF=C98965
CLONE=E3293_2Z
TID=Os.1904.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.1904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0030H07.32 (P0030H07.32), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0613011/11expressed protein
LOC_Os01g061401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06060Os.1899.1.S1_at9/111+2893487..2894867PrMC3, putative, expressed
LOC_Os01g06070OsAffx.23131.1.S1_at11/111+2895840..2896698hypothetical protein
LOC_Os01g06070OsAffx.23131.2.S1_x_at1/111+2895840..2896698hypothetical protein
LOC_Os01g06080OsAffx.10933.1.S1_s_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06080Os.55760.1.S1_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06090OsAffx.23132.1.S1_at11/111+2903854..2904722expressed protein
LOC_Os01g06090OsAffx.10933.1.S1_s_at2/111+2903854..2904722expressed protein
LOC_Os01g06100NANA1+2906883..2909309transposon protein, putative, unclassified
LOC_Os01g06110NANA1+2909706..2912906transposon protein, putative, unclassified
LOC_Os01g06120OsAffx.1944.1.S1_at11/111+2917227..2918121hypothetical protein
LOC_Os01g06130Os.1904.1.S1_at11/111+2919445..2921819expressed protein
LOC_Os01g06130Os.31874.2.S1_x_at1/111+2919445..2921819expressed protein
LOC_Os01g06140Os.49713.1.S1_at11/111+2922737..2925567expressed protein
LOC_Os01g06140Os.31874.2.S1_x_at1/111+2922737..2925567expressed protein
LOC_Os01g06140Os.1904.1.S1_at1/111+2922737..2925567expressed protein
LOC_Os01g06140Os.31874.1.S1_at1/111+2922737..2925567expressed protein
LOC_Os01g06150Os.31874.1.S1_at11/111+2927618..2929688expressed protein
LOC_Os01g06150Os.31874.2.S1_x_at10/111+2927618..2929688expressed protein
LOC_Os01g06160OsAffx.16187.1.S1_at1/111+2931530..2934520retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06170Os.28943.1.S1_x_at2/111+2938130..2941180retrotransposon protein, putative, unclassified
LOC_Os01g06180NANA1+2941800..2944537transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1904.1.S1_at--277--8131Chr01:2921130..2921154 (25 bp)
GGAAATTGAACCATTACCACGGCAT
LOC_Os01g06130
Os.1904.1.S1_at--63--3351Chr01:2921147..2921171 (25 bp)
CACGGCATTCGTGTTGCTTGTGGAT
LOC_Os01g06130
Os.1904.1.S1_at--953--151Chr01:2921195..2921219 (25 bp)
ATTTGCCCTAAGTGCGGCTACGCAA
LOC_Os01g06130
Os.1904.1.S1_at--624--5091Chr01:2921234..2921258 (25 bp)
GCACATGTCAAAGCCACTGGGTTTG
LOC_Os01g06130
Os.1904.1.S1_at--895--6291Chr01:2921288..2921312 (25 bp)
GATGATCTCTCAATTGTTCCAGCAT
LOC_Os01g06130
Os.1904.1.S1_at--537--1631Chr01:2921315..2921339 (25 bp)
AGCGTGTCAACCATCAGCTTGCTTG
LOC_Os01g06130
Os.1904.1.S1_at--235--4931Chr01:2921331..2921355 (25 bp)
GCTTGCTTGCACAATGCGGTGTCAA
LOC_Os01g06130
Os.1904.1.S1_at--184--4271Chr01:2921526..2921550 (25 bp)
CCTGAGGACTAAGACCGTGCTGACT
LOC_Os01g06130
Os.1904.1.S1_at--1043--3991Chr01:2921541..2921565 (25 bp)
CGTGCTGACTGATGTATTTCTCCTG
LOC_Os01g06130
Os.1904.1.S1_at--535--8912Chr01:2921629..2921653 (25 bp)
TGAGCAGTTTTACCAGGCATCGCAT
LOC_Os01g06130
Os.1904.1.S1_at--458--6771Chr01:2921680..2921704 (25 bp)
GTTACAGACCTTCATTGTGAGCATG
LOC_Os01g06130
Target Sequence 
GGAAATTGAACCATTACCACGGCATTCGTGTTGCTTGTGGATATTTTACGGTTATGAAAGGCAGCATTTGCCCTAAGTGC
GGCTACGCAATGGAGAAGGCAATGGCACATGTCAAAGCCACTGGGTTTGTGGTTGGGACAGCCAGGTACACTGTCAAGGA
TGATCTCTCAATTGTTCCAGCATCCAGCGTGTCAACCATCAGCTTGCTTGCACAATGCGGTGTCAAGGACTTGAGCACGC
TGCAGGAAAGGACCGTGAAGATTGGCAAGGAAGAGGCACTGGAGNNACTCCTTGCATCCCTGAGGACTAAGACCGTGCTG
ACTGATGTATTTCTCCTGAAGAAAAAAGTTAGTTGCAAGAGGGAGGCTGCTACTTAGTTAGTATGATACATGTATGATAC
ATGAGCAGTTTTACCAGGCATCGCATCTGAGAAATTGGAAAGTTCCGTACAAGTTACAGACCTTCATTGTGAGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis