Browse Element(s) Details


Os.31874.2.S1_x_at

Description gb:NM_184422.1
DB_XREF= gi:34895933
GEN=P0030H07.34
TID=Os.31874.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0030H07.34 (P0030H07.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0030H07.34 (P0030H07.34), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0615010/11expressed protein
LOC_Os01g061401/11expressed protein
LOC_Os01g061301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06090OsAffx.23132.1.S1_at11/111+2903854..2904722expressed protein
LOC_Os01g06090OsAffx.10933.1.S1_s_at2/111+2903854..2904722expressed protein
LOC_Os01g06100NANA1+2906883..2909309transposon protein, putative, unclassified
LOC_Os01g06110NANA1+2909706..2912906transposon protein, putative, unclassified
LOC_Os01g06120OsAffx.1944.1.S1_at11/111+2917227..2918121hypothetical protein
LOC_Os01g06130Os.1904.1.S1_at11/111+2919445..2921819expressed protein
LOC_Os01g06130Os.31874.2.S1_x_at1/111+2919445..2921819expressed protein
LOC_Os01g06140Os.49713.1.S1_at11/111+2922737..2925567expressed protein
LOC_Os01g06140Os.31874.2.S1_x_at1/111+2922737..2925567expressed protein
LOC_Os01g06140Os.1904.1.S1_at1/111+2922737..2925567expressed protein
LOC_Os01g06140Os.31874.1.S1_at1/111+2922737..2925567expressed protein
LOC_Os01g06150Os.31874.1.S1_at11/111+2927618..2929688expressed protein
LOC_Os01g06150Os.31874.2.S1_x_at10/111+2927618..2929688expressed protein
LOC_Os01g06160OsAffx.16187.1.S1_at1/111+2931530..2934520retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06170Os.28943.1.S1_x_at2/111+2938130..2941180retrotransposon protein, putative, unclassified
LOC_Os01g06180NANA1+2941800..2944537transposon protein, putative, unclassified
LOC_Os01g06200NANA1+2946899..2949815retrotransposon protein, putative, unclassified
LOC_Os01g06210Os.1899.1.S1_at1/111+2951316..2952306PrMC3, putative
LOC_Os01g06220Os.33885.1.S1_at11/111+2953968..2955241PrMC3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31874.2.S1_x_at--111--2331Chr01:2928766..2928790 (25 bp)
AAAGTCTGCTTTGCCGAGGCTGGTA
LOC_Os01g06150
Os.31874.2.S1_x_at--1065--9171Chr01:2928777..2928801 (25 bp)
TGCCGAGGCTGGTAGTGATGTCATT
LOC_Os01g06150
Os.31874.2.S1_x_at--645--8731Chr01:2928795..2928819 (25 bp)
TGTCATTGAGTTTATCTCCTGCCTC
LOC_Os01g06150
Os.31874.2.S1_x_at--1042--10271Chr01:2928821..2928845 (25 bp)
TTTGCCTCCCAATGAGCACCATCAT
LOC_Os01g06150
Os.31874.2.S1_x_at--937--4991Chr01:2928878..2928902 (25 bp)
GCATGGGCAATGTGCTTGACAGCGT
LOC_Os01g06150
Os.31874.2.S1_x_at--95--6931Chr01:2928921..2928945 (25 bp)
GTATGTAATCTCAAGCCAAAGCAAG
LOC_Os01g06150
Os.31874.2.S1_x_at--735--2731Chr01:2928939..2928963 (25 bp)
AAGCAAGGAACGCTTCCTCAGCCCG
LOC_Os01g06150
Os.31874.2.S1_x_at--840--7311Chr01:2928979..2929003 (25 bp)
GTGCTCTGTCCATTGCAGCAGCTGC
LOC_Os01g06150
Os.31874.2.S1_x_at--487--3411Chr01:2928994..2929018 (25 bp)
CAGCAGCTGCTGCTGGATGCAAAGT
LOC_Os01g06150
Os.31874.2.S1_x_at--824--3193Chr01:2929026..2929050 (25 bp)
CAATGCCAGCTTCTTCACATGTGAA
LOC_Os01g06150
Os.31874.2.S1_x_at--808--8151NONE
GGAAATCGACCGTCTGTGGTGTCAA
NONE
Target Sequence 
AAAGTCTGCTTTGCCGAGGCTGGTAGTGATGTCATTGAGTTTATCTCCTGCCTCCTTTGCCTCCCAATGAGCACCATCAT
CAACATGCTTACCAAGGAGCGTATGGTTGGTAGCATGGGCAATGTGCTTGACAGCGTGGAGAAGCTGGATTCCAAGTATG
TAATCTCAAGCCAAAGCAAGGAACGCTTCCTCAGCCCGACGGTTGCCCCCACCGTGCTCTGTCCATTGCAGCAGCTGCTG
CTGGATGCAAAGTTAAATGTCAATGCCAGCTTCTTCACATGTGAAGGGAAATCGACCGTCTGTGGTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31874.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis