Browse Element(s) Details


OsAffx.23132.1.S1_at

Description tigr:9629.m00535
TID=OsAffx.23132.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0609011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06020Os.24869.1.A1_at9/111+2874449..2879488Aspartyl-tRNA synthetase, putative, expressed
LOC_Os01g06030OsAffx.23131.2.S1_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06030OsAffx.23131.2.S1_x_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06040OsAffx.10932.1.S1_at11/111+2883862..2885236hypothetical protein
LOC_Os01g06050Os.54577.1.S1_at11/111+2889722..2891509expressed protein
LOC_Os01g06060Os.1899.1.S1_at9/111+2893487..2894867PrMC3, putative, expressed
LOC_Os01g06070OsAffx.23131.1.S1_at11/111+2895840..2896698hypothetical protein
LOC_Os01g06070OsAffx.23131.2.S1_x_at1/111+2895840..2896698hypothetical protein
LOC_Os01g06080OsAffx.10933.1.S1_s_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06080Os.55760.1.S1_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06090OsAffx.23132.1.S1_at11/111+2903854..2904722expressed protein
LOC_Os01g06090OsAffx.10933.1.S1_s_at2/111+2903854..2904722expressed protein
LOC_Os01g06100NANA1+2906883..2909309transposon protein, putative, unclassified
LOC_Os01g06110NANA1+2909706..2912906transposon protein, putative, unclassified
LOC_Os01g06120OsAffx.1944.1.S1_at11/111+2917227..2918121hypothetical protein
LOC_Os01g06130Os.1904.1.S1_at11/111+2919445..2921819expressed protein
LOC_Os01g06130Os.31874.2.S1_x_at1/111+2919445..2921819expressed protein
LOC_Os01g06140Os.49713.1.S1_at11/111+2922737..2925567expressed protein
LOC_Os01g06140Os.31874.2.S1_x_at1/111+2922737..2925567expressed protein
LOC_Os01g06140Os.1904.1.S1_at1/111+2922737..2925567expressed protein
LOC_Os01g06140Os.31874.1.S1_at1/111+2922737..2925567expressed protein
LOC_Os01g06150Os.31874.1.S1_at11/111+2927618..2929688expressed protein
LOC_Os01g06150Os.31874.2.S1_x_at10/111+2927618..2929688expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23132.1.S1_at--198--8451Chr01:2904379..2904403 (25 bp)
TGGCCACGAAACTTTACCGCTGCAG
LOC_Os01g06090
OsAffx.23132.1.S1_at--179--4011Chr01:2904352..2904376 (25 bp)
CGTGCGACTACAACGAGTGCTATGA
LOC_Os01g06090
OsAffx.23132.1.S1_at--722--9071Chr01:2904335..2904359 (25 bp)
TGCTATGACTATGTTTCCACGGTGA
LOC_Os01g06090
OsAffx.23132.1.S1_at--576--10671Chr01:2904321..2904345 (25 bp)
TTCCACGGTGAGTGGCTTGCGTTGT
LOC_Os01g06090
OsAffx.23132.1.S1_at--252--10711Chr01:2904305..2904329 (25 bp)
TTGCGTTGTCAGATCGCTCGATGCC
LOC_Os01g06090
OsAffx.23132.1.S1_at--822--4191Chr01:2904282..2904306 (25 bp)
CCCTGGCAAGATGACGGTGGCAATG
LOC_Os01g06090
OsAffx.23132.1.S1_at--554--10831Chr01:2904253..2904277 (25 bp)
TTGTGGTGTCGAGCACGAGCACTAC
LOC_Os01g06090
OsAffx.23132.1.S1_at--703--1871Chr01:2904239..2904263 (25 bp)
ACGAGCACTACAGCTACCGGATCGG
LOC_Os01g06090
OsAffx.23132.1.S1_at--859--1531Chr01:2904189..2904213 (25 bp)
AGCATATGCTGTTGCCGGCACGGGA
LOC_Os01g06090
OsAffx.23132.1.S1_at--706--1471Chr01:2904080..2904104 (25 bp)
ACCACCTTCGGTGTTACTGACATCA
LOC_Os01g06090
OsAffx.23132.1.S1_at--948--11Chr01:2903925..2904053 (25 bp)
ATTGGCTACACTGAGGGCTTGGCGA
LOC_Os01g06090
Target Sequence 
TGGCCACGAAACTTTACCGCTGCAGCTCGTGCGACTACAACGAGTGCTATGACTATGTTTCCACGGTGAGTGGCTTGCGT
TGTCAGATCGCTCGATGCCCTGGCAAGATGACGGTGGCAATGAAGCTTGTGGTGTCGAGCACGAGCACTACAGCTACCGG
ATCGGCCAGCGGCGGCGAGGCGGCGCAACCAGCATATGCTGTTGCCGGCACGGGATTTGTGCAGGGGGTGGTGACGTACA
CGATCATGGATGACCTCAGGGTCGCGCCCATGTCCACCATCTCCGGCATCACGCTGCTCACCACCTTCGGTGTTACTGAC
ATCACCTCGCTCCAGGAGAAGACCGTGCAGATTGGCTACACTGAGGGCTTGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis