Browse Element(s) Details


OsAffx.10932.1.S1_at

Description tigr:9629.m00530
TID=OsAffx.10932.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0604011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06000OsAffx.10931.1.S1_at11/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.10931.3.S1_at2/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06000OsAffx.24723.1.S1_at1/111+2857419..2864074pentatricopeptide, putative, expressed
LOC_Os01g06010Os.47037.1.S1_at11/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06010OsAffx.10929.1.S1_x_at6/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06020Os.24869.1.A1_at9/111+2874449..2879488Aspartyl-tRNA synthetase, putative, expressed
LOC_Os01g06030OsAffx.23131.2.S1_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06030OsAffx.23131.2.S1_x_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06040OsAffx.10932.1.S1_at11/111+2883862..2885236hypothetical protein
LOC_Os01g06050Os.54577.1.S1_at11/111+2889722..2891509expressed protein
LOC_Os01g06060Os.1899.1.S1_at9/111+2893487..2894867PrMC3, putative, expressed
LOC_Os01g06070OsAffx.23131.1.S1_at11/111+2895840..2896698hypothetical protein
LOC_Os01g06070OsAffx.23131.2.S1_x_at1/111+2895840..2896698hypothetical protein
LOC_Os01g06080OsAffx.10933.1.S1_s_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06080Os.55760.1.S1_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06090OsAffx.23132.1.S1_at11/111+2903854..2904722expressed protein
LOC_Os01g06090OsAffx.10933.1.S1_s_at2/111+2903854..2904722expressed protein
LOC_Os01g06100NANA1+2906883..2909309transposon protein, putative, unclassified
LOC_Os01g06110NANA1+2909706..2912906transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10932.1.S1_at--238--8431Chr01:2884793..2884817 (25 bp)
GGCCTACCAGTGTTCGACCATCCGG
LOC_Os01g06040
OsAffx.10932.1.S1_at--306--7171Chr01:2884757..2884781 (25 bp)
GTCTCTGCCGTCTCTGAAGGCGGCG
LOC_Os01g06040
OsAffx.10932.1.S1_at--139--771Chr01:2884711..2884735 (25 bp)
ATGTCGTCGGACACGGGCTGCCGCT
LOC_Os01g06040
OsAffx.10932.1.S1_at--131--4551Chr01:2884666..2884690 (25 bp)
GCCCAGACTGGCAAAGGGTTCGTGC
LOC_Os01g06040
OsAffx.10932.1.S1_at--357--8611Chr01:2884635..2884659 (25 bp)
TGGTGACGTACACCGTCATGGACGA
LOC_Os01g06040
OsAffx.10932.1.S1_at--838--4131Chr01:2884536..2884560 (25 bp)
CGCTCGAGGAAAAGACGGTCAAGAT
LOC_Os01g06040
OsAffx.10932.1.S1_at--1080--5291Chr01:2884036..2884060 (25 bp)
GAAGGCATCGTTGCAGTCCAAGACC
LOC_Os01g06040
OsAffx.10932.1.S1_at--856--7271Chr01:2884021..2884045 (25 bp)
GTCCAAGACCGTGTTGACAGATGTC
LOC_Os01g06040
OsAffx.10932.1.S1_at--563--10751Chr01:2884008..2884032 (25 bp)
TTGACAGATGTCTTCCTGAACAGGA
LOC_Os01g06040
OsAffx.10932.1.S1_at--707--5611Chr01:2883963..2883987 (25 bp)
GACAAGCACCATAGATCCGGCGACA
LOC_Os01g06040
OsAffx.10932.1.S1_at--615--9371Chr01:2883932..2883956 (25 bp)
TCGACGCCCGAGCAACGAGCGAGAA
LOC_Os01g06040
Target Sequence 
GGCCTACCAGTGTTCGACCATCCGGCCGACGACCCCGTCTCTGCCGTCTCTGAAGGCGGCGTTCCCGCCCTTCGGCGCGG
GGATGTCGTCGGACACGGGCTGCCGCTGTTCGACCTGCCTCGCCGCCGCCCAGACTGGCAAAGGGTTCGTGCGGGACGTG
GTGACGTACACCGTCATGGACGACCTCACCTTCATGCCCATGTCGAGCATCTCCAGCATCGCGCTGCTCAGCAAGCTCGG
CGTCGAGGACCTCTCCGCGCTCGAGGAAAAGACGGTCAAGATCGGCTACCAAGAGGNNNTNNANNNNCTGAAGGCATCGT
TGCAGTCCAAGACCGTGTTGACAGATGTCTTCCTGAACAGGAAGAAGAAGGCTCGTGCCGGCGACAAGCACCATAGATCC
GGCGACAAGAACGTCGACGCCCGAGCAACGAGCGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis