Browse Element(s) Details


Os.1899.1.S1_at

Description gb:BI811999
DB_XREF= gi:16577904
DB_XREF=C003B11
CLONE=C003B11
TID=Os.1899.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.1899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0030H07.24 (P0030H07.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g060609/11PrMC3, putative, expressed
LOC_Os01g062101/11PrMC3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06010Os.47037.1.S1_at11/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06010OsAffx.10929.1.S1_x_at6/111+2868925..2869667Histone H2B, putative, expressed
LOC_Os01g06020Os.24869.1.A1_at9/111+2874449..2879488Aspartyl-tRNA synthetase, putative, expressed
LOC_Os01g06030OsAffx.23131.2.S1_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06030OsAffx.23131.2.S1_x_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06040OsAffx.10932.1.S1_at11/111+2883862..2885236hypothetical protein
LOC_Os01g06050Os.54577.1.S1_at11/111+2889722..2891509expressed protein
LOC_Os01g06060Os.1899.1.S1_at9/111+2893487..2894867PrMC3, putative, expressed
LOC_Os01g06070OsAffx.23131.1.S1_at11/111+2895840..2896698hypothetical protein
LOC_Os01g06070OsAffx.23131.2.S1_x_at1/111+2895840..2896698hypothetical protein
LOC_Os01g06080OsAffx.10933.1.S1_s_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06080Os.55760.1.S1_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06090OsAffx.23132.1.S1_at11/111+2903854..2904722expressed protein
LOC_Os01g06090OsAffx.10933.1.S1_s_at2/111+2903854..2904722expressed protein
LOC_Os01g06100NANA1+2906883..2909309transposon protein, putative, unclassified
LOC_Os01g06110NANA1+2909706..2912906transposon protein, putative, unclassified
LOC_Os01g06120OsAffx.1944.1.S1_at11/111+2917227..2918121hypothetical protein
LOC_Os01g06130Os.1904.1.S1_at11/111+2919445..2921819expressed protein
LOC_Os01g06130Os.31874.2.S1_x_at1/111+2919445..2921819expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1899.1.S1_at--671--1911Chr01:2894394..2894418 (25 bp)
ACGTGTCCCTGCTGACCGTCGAGAT
LOC_Os01g06060
Os.1899.1.S1_at--111--4612Chr01:2894553..2894577 (25 bp)
GCGACGTGCTCTACGACCGCGTGGT
LOC_Os01g06060
Os.1899.1.S1_at--903--9371Chr01:2894631..2894655 (25 bp)
TCGAGGGAGCGCAGCATGGCTTCTC
LOC_Os01g06060
Os.1899.1.S1_at--595--1531Chr01:2894643..2894667 (25 bp)
AGCATGGCTTCTCGGTGATACAACC
LOC_Os01g06060
Os.1899.1.S1_at--537--8071Chr01:2894670..2894694 (25 bp)
GGAGCCCAGAAACCAGCGAGGTCAT
LOC_Os01g06060
Os.1899.1.S1_at--1126--2331Chr01:2894679..2894703 (25 bp)
AAACCAGCGAGGTCATCCAAGTCCT
LOC_Os01g06060
Os.1899.1.S1_at--28--591Chr01:2894693..2894717 (25 bp)
ATCCAAGTCCTGAAGCGATTTGTTC
LOC_Os01g06060
Os.1899.1.S1_at--37--6531Chr01:2894709..2894733 (25 bp)
GATTTGTTCACAAGGCGATACGCCC
LOC_Os01g06060
Os.1899.1.S1_at--608--4631Chr01:2894723..2894747 (25 bp)
GCGATACGCCCAGCTGAGGGTTGAA
LOC_Os01g06060
Os.1899.1.S1_at--300--7671NONE
GGGATAATATCCACTCTTGTTTACT
NONE
Os.1899.1.S1_at--1043--3311NONE
CACTCTTGTTTACTTTCAATTTCAA
NONE
Target Sequence 
ACGTGTCCCTGCTGACCGTCGAGATGNCCGACCAGTTCTGGCGCCTGGCGCTGCCGGCGGGGGCGACCAGGGACCACCCG
GTGGCGAACCCGTTCGGCCCGGAGAGCCCCAGCCTGGAGGCGGTGGCGCTNCCGCCGGCGCTCGTCGTGGCGTCCGNCGG
CGACGTGCTCTACGACCGCGTGGTGGGCTACGCGGCGAGGTTGAAGGAGATGGGCAAGNCGGTGGAGCTCGTCGAGTTCG
AGGGAGCGCAGCATGGCTTCTCGGTGATACAACCANTGGAGCCCAGAAACCAGCGAGGTCATCCAAGTCCTGAAGCGATT
TGTTCACAAGGCGATACGCCCAGCTGAGGGTTGAAAAGGACAAGGCAAATTGAGTGGGATAATATCCACTCTTGTTTACT
TTCAATTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis