Browse Element(s) Details


OsAffx.10933.1.S1_s_at

Description gb:NM_184415.1
DB_XREF= gi:34895919
GEN=P0030H07.26
TID=OsAffx.10933.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0030H07.26 (P0030H07.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0608011/11hypothetical protein
LOC_Os01g060902/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06020Os.24869.1.A1_at9/111+2874449..2879488Aspartyl-tRNA synthetase, putative, expressed
LOC_Os01g06030OsAffx.23131.2.S1_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06030OsAffx.23131.2.S1_x_at11/111+2882227..2883103hypothetical protein
LOC_Os01g06040OsAffx.10932.1.S1_at11/111+2883862..2885236hypothetical protein
LOC_Os01g06050Os.54577.1.S1_at11/111+2889722..2891509expressed protein
LOC_Os01g06060Os.1899.1.S1_at9/111+2893487..2894867PrMC3, putative, expressed
LOC_Os01g06070OsAffx.23131.1.S1_at11/111+2895840..2896698hypothetical protein
LOC_Os01g06070OsAffx.23131.2.S1_x_at1/111+2895840..2896698hypothetical protein
LOC_Os01g06080OsAffx.10933.1.S1_s_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06080Os.55760.1.S1_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06090OsAffx.23132.1.S1_at11/111+2903854..2904722expressed protein
LOC_Os01g06090OsAffx.10933.1.S1_s_at2/111+2903854..2904722expressed protein
LOC_Os01g06100NANA1+2906883..2909309transposon protein, putative, unclassified
LOC_Os01g06110NANA1+2909706..2912906transposon protein, putative, unclassified
LOC_Os01g06120OsAffx.1944.1.S1_at11/111+2917227..2918121hypothetical protein
LOC_Os01g06130Os.1904.1.S1_at11/111+2919445..2921819expressed protein
LOC_Os01g06130Os.31874.2.S1_x_at1/111+2919445..2921819expressed protein
LOC_Os01g06140Os.49713.1.S1_at11/111+2922737..2925567expressed protein
LOC_Os01g06140Os.31874.2.S1_x_at1/111+2922737..2925567expressed protein
LOC_Os01g06140Os.1904.1.S1_at1/111+2922737..2925567expressed protein
LOC_Os01g06140Os.31874.1.S1_at1/111+2922737..2925567expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10933.1.S1_s_at--152--10091Chr01:2898919..2898943 (25 bp)
TAGGTTCGGTGATTGCTGCAACTAC
LOC_Os01g06080
OsAffx.10933.1.S1_s_at--998--7451Chr01:2898816..2898840 (25 bp)
GTGTCGAGCACCACCATTGCTGGAT
LOC_Os01g06080
OsAffx.10933.1.S1_s_at--595--1131Chr01:2898762..2898786 (25 bp)
AGTGCGCCGTCTGCAATCGCAGGCA
LOC_Os01g06080
OsAffx.10933.1.S1_s_at--524--8951Chr01:2898716..2898740 (25 bp)
TGACATACGCCGTCATGGATGACCT
LOC_Os01g06080
OsAffx.10933.1.S1_s_at--906--8551Chr01:2898701..2898725 (25 bp)
TGGATGACCTCAAGGTCGCGCCCAT
LOC_Os01g06080
OsAffx.10933.1.S1_s_at--1025--531Chr01:2898669..2898693 (25 bp)
ATCGCGCTGGTCAAATCCGGTGTCA
LOC_Os01g06080
OsAffx.10933.1.S1_s_at--1024--2271Chr01:2898657..2898681 (25 bp)
AAATCCGGTGTCACTCACATCAAGT
LOC_Os01g06080
OsAffx.10933.1.S1_s_at--246--7232Chr01:2898634..2898658 (25 bp)
GTCGCTCCAGGAGAAGACCGTGCAG
LOC_Os01g06080
OsAffx.10933.1.S1_s_at--236--5831Chr01:2898619..2898643 (25 bp)
GACCGTGCAGATCGGCTACACTGAG
LOC_Os01g06080
OsAffx.10933.1.S1_s_at--790--7232Chr01:2898500..2898524 (25 bp)
GTCGCTGCAGTCGAAGACGGTGCTT
LOC_Os01g06080
OsAffx.10933.1.S1_s_at--849--2951Chr01:2898444..2898468 (25 bp)
AATGGCCATTTGTGTTGGTCCTTCT
LOC_Os01g06080
Target Sequence 
TAGGTTCGGTGATTGCTGCAACTACGTCTCCACGTTGCCGCAGTGCAGCGGCAAGATGAGTTTGCCGGTGAAGCATGTGA
TGGTGTCGAGCACCACCATTGCTGGATCCACCGGCGGCGAGGTGCCGGCGACCGCGAGTGCGCCGTCTGCAATCGCAGGC
ACGGGGTTTGTGCAGGGGTTGGTGACATACGCCGTCATGGATGACCTCAAGGTCGCGCCCATGTCCACCATCGCGCTGGT
CAAATCCGGTGTCACTCACATCAAGTCGCTCCAGGAGAAGACCGTGCAGATCGGCTACACTGAGGGTTTGGCTATGCTGA
AGGCGTCGCTGCAGTCGAAGACGGTGCTTACAGATGTTTTCCTTGGCAAGAAGCGGAAGAAATGGCCATTTGTGTTGGTC
CTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10933.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis