Browse Element(s) Details


Os.49713.1.S1_at

Description gb:AK108793.1
DB_XREF= gi:32994002
TID=Os.49713.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-B09, full insert sequence.
FL= gb:AK108793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0614011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06080OsAffx.10933.1.S1_s_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06080Os.55760.1.S1_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06090OsAffx.23132.1.S1_at11/111+2903854..2904722expressed protein
LOC_Os01g06090OsAffx.10933.1.S1_s_at2/111+2903854..2904722expressed protein
LOC_Os01g06100NANA1+2906883..2909309transposon protein, putative, unclassified
LOC_Os01g06110NANA1+2909706..2912906transposon protein, putative, unclassified
LOC_Os01g06120OsAffx.1944.1.S1_at11/111+2917227..2918121hypothetical protein
LOC_Os01g06130Os.1904.1.S1_at11/111+2919445..2921819expressed protein
LOC_Os01g06130Os.31874.2.S1_x_at1/111+2919445..2921819expressed protein
LOC_Os01g06140Os.49713.1.S1_at11/111+2922737..2925567expressed protein
LOC_Os01g06140Os.31874.2.S1_x_at1/111+2922737..2925567expressed protein
LOC_Os01g06140Os.1904.1.S1_at1/111+2922737..2925567expressed protein
LOC_Os01g06140Os.31874.1.S1_at1/111+2922737..2925567expressed protein
LOC_Os01g06150Os.31874.1.S1_at11/111+2927618..2929688expressed protein
LOC_Os01g06150Os.31874.2.S1_x_at10/111+2927618..2929688expressed protein
LOC_Os01g06160OsAffx.16187.1.S1_at1/111+2931530..2934520retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06170Os.28943.1.S1_x_at2/111+2938130..2941180retrotransposon protein, putative, unclassified
LOC_Os01g06180NANA1+2941800..2944537transposon protein, putative, unclassified
LOC_Os01g06200NANA1+2946899..2949815retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49713.1.S1_at--280--3692Chr01:2925165..2925189 (25 bp)
CTTTGCATTTCTTATTGTATCCATT
LOC_Os01g06140
Os.49713.1.S1_at--484--6131Chr01:2925234..2925258 (25 bp)
GAGGTGCGGCCTCTTTTTATCAAAA
LOC_Os01g06140
Os.49713.1.S1_at--890--6931Chr01:2925276..2925300 (25 bp)
GTAGTCTTGCAAATAGTTGGCTTAC
LOC_Os01g06140
Os.49713.1.S1_at--980--5191Chr01:2925318..2925342 (25 bp)
GCAATTATGCAGTATCCACCCAATG
LOC_Os01g06140
Os.49713.1.S1_at--872--9891Chr01:2925352..2925376 (25 bp)
TACTATCAATTTGGGTGTCTCACTA
LOC_Os01g06140
Os.49713.1.S1_at--491--2391Chr01:2925414..2925438 (25 bp)
AAAAAATGTACCTGTGTGCCTTCTA
LOC_Os01g06140
Os.49713.1.S1_at--188--7471Chr01:2925427..2925451 (25 bp)
GTGTGCCTTCTACATGCAAAAGAGA
LOC_Os01g06140
Os.49713.1.S1_at--677--5751Chr01:2925450..2925474 (25 bp)
GACGGGTGTGATTTCGGTTCTTGTA
LOC_Os01g06140
Os.49713.1.S1_at--327--5331Chr01:2925486..2925510 (25 bp)
GAAGTGATCCAATGCTATCTGTGTA
LOC_Os01g06140
Os.49713.1.S1_at--693--6511Chr01:2925528..2925552 (25 bp)
GATATTTTACTGTTAGCCGTCATAG
LOC_Os01g06140
Os.49713.1.S1_at--1130--9971Chr01:2925541..2925565 (25 bp)
TAGCCGTCATAGTCCAGATCCATTG
LOC_Os01g06140
Target Sequence 
CTTTGCATTTCTTATTGTATCCATTTAGCAAAAGTAGTATTTCCTTCGTTTTCGTTAATGAAAGCGGGAGAGGTGCGGCC
TCTTTTTATCAAAAAAAAAAAAGAAGCAAAAGTAGTCTTGCAAATAGTTGGCTTACTAGTTTGGTAGTGATATGCAATTA
TGCAGTATCCACCCAATGAAATCTTTCTACTATCAATTTGGGTGTCTCACTAGAAATATGTTTTTGTGTTCTTTTTGTGT
CATTATCTAAAAAAATGTACCTGTGTGCCTTCTACATGCAAAAGAGACGGGTGTGATTTCGGTTCTTGTAGAATTGGTTC
AGAAGTGATCCAATGCTATCTGTGTATATGAATTCCAAATTCAGATATTTTACTGTTAGCCGTCATAGTCCAGATCCATT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis