Browse Element(s) Details


OsAffx.1944.1.S1_at

Description tigr:9629.m00538
TID=OsAffx.1944.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0612011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06060Os.1899.1.S1_at9/111+2893487..2894867PrMC3, putative, expressed
LOC_Os01g06070OsAffx.23131.1.S1_at11/111+2895840..2896698hypothetical protein
LOC_Os01g06070OsAffx.23131.2.S1_x_at1/111+2895840..2896698hypothetical protein
LOC_Os01g06080OsAffx.10933.1.S1_s_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06080Os.55760.1.S1_at11/111+2898404..2900421hypothetical protein
LOC_Os01g06090OsAffx.23132.1.S1_at11/111+2903854..2904722expressed protein
LOC_Os01g06090OsAffx.10933.1.S1_s_at2/111+2903854..2904722expressed protein
LOC_Os01g06100NANA1+2906883..2909309transposon protein, putative, unclassified
LOC_Os01g06110NANA1+2909706..2912906transposon protein, putative, unclassified
LOC_Os01g06120OsAffx.1944.1.S1_at11/111+2917227..2918121hypothetical protein
LOC_Os01g06130Os.1904.1.S1_at11/111+2919445..2921819expressed protein
LOC_Os01g06130Os.31874.2.S1_x_at1/111+2919445..2921819expressed protein
LOC_Os01g06140Os.49713.1.S1_at11/111+2922737..2925567expressed protein
LOC_Os01g06140Os.31874.2.S1_x_at1/111+2922737..2925567expressed protein
LOC_Os01g06140Os.1904.1.S1_at1/111+2922737..2925567expressed protein
LOC_Os01g06140Os.31874.1.S1_at1/111+2922737..2925567expressed protein
LOC_Os01g06150Os.31874.1.S1_at11/111+2927618..2929688expressed protein
LOC_Os01g06150Os.31874.2.S1_x_at10/111+2927618..2929688expressed protein
LOC_Os01g06160OsAffx.16187.1.S1_at1/111+2931530..2934520retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06170Os.28943.1.S1_x_at2/111+2938130..2941180retrotransposon protein, putative, unclassified
LOC_Os01g06180NANA1+2941800..2944537transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1944.1.S1_at--316--9931Chr01:2917905..2917929 (25 bp)
TACGGCAGCGTCGTTGACAAGCTCG
LOC_Os01g06120
OsAffx.1944.1.S1_at--1118--2671Chr01:2917744..2917768 (25 bp)
AAGCTGCTACAACTTCGTGACCAAG
LOC_Os01g06120
OsAffx.1944.1.S1_at--629--2511Chr01:2917734..2917758 (25 bp)
AACTTCGTGACCAAGGTGAACGGCA
LOC_Os01g06120
OsAffx.1944.1.S1_at--35--1931Chr01:2917715..2917739 (25 bp)
ACGGCACGCCGTGTCCGGTGTGCAA
LOC_Os01g06120
OsAffx.1944.1.S1_at--37--4091Chr01:2917679..2917703 (25 bp)
CGACCGAGGTGAGTCTTGTTGAGCC
LOC_Os01g06120
OsAffx.1944.1.S1_at--749--931Chr01:2917595..2917619 (25 bp)
AGGCAAGCTCTAGCAAGGCTGGTTA
LOC_Os01g06120
OsAffx.1944.1.S1_at--628--9531Chr01:2917587..2917611 (25 bp)
TCTAGCAAGGCTGGTTACGCGCCGG
LOC_Os01g06120
OsAffx.1944.1.S1_at--901--9931Chr01:2917572..2917596 (25 bp)
TACGCGCCGGGCAAGGTGACGTACA
LOC_Os01g06120
OsAffx.1944.1.S1_at--902--9111Chr01:2917297..2917321 (25 bp)
TGCTGAAGGCTTCGTTGCAGTCAAA
LOC_Os01g06120
OsAffx.1944.1.S1_at--170--6671Chr01:2917284..2917308 (25 bp)
GTTGCAGTCAAAGACAGTGCTCACT
LOC_Os01g06120
OsAffx.1944.1.S1_at--112--1971Chr01:2917262..2917286 (25 bp)
ACTGATGTCTTCCTCGGTGCGAGGC
LOC_Os01g06120
Target Sequence 
TACGGCAGCGTCGTTGACAAGCTCGGCGCCGACTACGCCTGCCGCGGCGACGTCAAGGCCGCGCTGCTCGCGCCCACGGC
CGCCCTCCGGTTGGGCTCGCCGGCGGACGCCGACAACGGCGGCGGCGCCCTTTACCGGTGCAGCGGCTGCGCCTGCTCGA
GAAGCTGCTACAACTTCGTGACCAAGGTGAACGGCACGCCGTGTCCGGTGTGCAAGAGGAAGATGGCGACCGAGGTGAGT
CTTGTTGAGCCGGACGATGTCTCCGGCGCCGGCGCCAAGGTCGTGACGTCGCCGGCGGCGCCGTCTGGCGAGGCAAGCTC
TAGCAAGGCTGGTTACGCGCCGGGCAAGGTGACGTACACGGTGATGGATGACCTCACCGTCGCGCCGTCGTCCACCGTCT
CCGCCGTCGCCGCCCTCGTGGCGCTTGGCGTGACGGACATCAGGGGACTGCAGGAGAAGACCGTCGAGGTCGGCTACGAC
GAGGNNNNNNNNGTGCTGAAGGCTTCGTTGCAGTCAAAGACAGTGCTCACTGATGTCTTCCTCGGTGCGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis