Browse Element(s) Details


OsAffx.15011.1.S1_at

Description tigr:9633.m03587
TID=OsAffx.15011.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C2H2 type, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3862011/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38560OsAffx.27227.1.S1_at11/115+22541931..22542431Histone H2B, putative
LOC_Os05g38560OsAffx.10929.1.S1_x_at1/115+22541931..22542431Histone H2B, putative
LOC_Os05g38570Os.52526.1.S1_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.7480.1.S1_x_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.52655.2.S1_at1/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38580Os.49443.1.S1_at11/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38580Os.18980.1.A1_at1/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38590Os.52317.1.S1_at11/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38590Os.17700.1.S1_x_at9/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38600OsAffx.15010.1.S1_at11/115+22555310..22555834Zinc finger, C2H2 type family protein
LOC_Os05g38610Os.3438.1.S1_at10/115+22558442..22561195Clathrin adaptor complex small chain family protein, expressed
LOC_Os05g38620OsAffx.15011.1.S1_at11/115+22565231..22565851Zinc finger, C2H2 type family protein
LOC_Os05g38630Os.11088.1.S1_at11/115+22566108..22569323Ras-related protein ARA-3, putative, expressed
LOC_Os05g38640Os.9745.1.S1_at11/115+22573654..22574824Histone H2A, putative, expressed
LOC_Os05g38650OsAffx.15012.1.S1_x_at11/115+22578592..22579023hypothetical protein
LOC_Os05g38660Os.55283.1.S1_at11/115+22582154..22582816expressed protein
LOC_Os05g38670OsAffx.15013.1.S1_at11/115+22587742..22591452cation efflux family protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15011.1.S1_at--1025--4652Chr05:22565346..22565370 (25 bp)
GCGTGTTCGAGTGCAGGACGTGCGG
LOC_Os05g38620
OsAffx.15011.1.S1_at--1130--4131Chr05:22565677..22565701 (25 bp)
CGCGGCGCCGCGTGTGAAGACCGAC
LOC_Os05g38620
OsAffx.15011.1.S1_at--766--8651Chr05:22565689..22565713 (25 bp)
TGTGAAGACCGACGACGTTGTCGTT
LOC_Os05g38620
OsAffx.15011.1.S1_at--184--5831Chr05:22565695..22565719 (25 bp)
GACCGACGACGTTGTCGTTGGAGAC
LOC_Os05g38620
OsAffx.15011.1.S1_at--322--4031Chr05:22565704..22565728 (25 bp)
CGTTGTCGTTGGAGACGAGTGCACC
LOC_Os05g38620
OsAffx.15011.1.S1_at--61--9031Chr05:22565723..22565747 (25 bp)
TGCACCGGCGGGATTTGCTTGGACC
LOC_Os05g38620
OsAffx.15011.1.S1_at--736--1771Chr05:22565726..22565750 (25 bp)
ACCGGCGGGATTTGCTTGGACCTGA
LOC_Os05g38620
OsAffx.15011.1.S1_at--15--8371Chr05:22565729..22565753 (25 bp)
GGCGGGATTTGCTTGGACCTGAACC
LOC_Os05g38620
OsAffx.15011.1.S1_at--171--3991Chr05:22565731..22565755 (25 bp)
CGGGATTTGCTTGGACCTGAACCTG
LOC_Os05g38620
OsAffx.15011.1.S1_at--148--1831Chr05:22565756..22565780 (25 bp)
ACGCCGTCGGAGAACTGCGACAAGT
LOC_Os05g38620
OsAffx.15011.1.S1_at--512--5971Chr05:22565765..22565789 (25 bp)
GAGAACTGCGACAAGTGCCGGCACG
LOC_Os05g38620
Target Sequence 
GCGTGTTCGAGTGCAGGACGTGCGGGAGGCGGTTCCCGACGTTCCAGGCGCTGGGCGGCCACCGCGCCAGCCACAAGCGC
CCGCGCCACGGCGCCGAGCGCGCGCCGCGGCCAGCAGGCGACGACGACGTCGGCGCCGGCGCCGGCGCCGCGCTCCGCCT
CGTCGGCGCGGCGTCGTCGTTGTCGACGGACGAGGCGCGCGCGGGAGGCGGCGGCCGCAGGACGAGGGGCGCCGGCGCCG
CGCACGGGTGCCCCGTCTGCGGGCTGGAGTTCGCCGTCGGGCAGGCGCTCGGCGGGCACATGCGGCGGCACCGCGCCGCC
GCCGGCGACGTCGCGGCGCCGCGTGTGAAGACCGACGACGTTGTCGTTGGAGACGAGTGCACCGGCGGGATTTGCTTGGA
CCTGAACCTGACGCCGTCGGAGAACTGCGACAAGTGCCGGCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis