Browse Element(s) Details


Os.18980.1.A1_at

Description gb:BM419362
DB_XREF= gi:18386163
DB_XREF=R012G07
CLONE=R012G07
TID=Os.18980.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18980 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0737011/11csAtPR5, putative, expressed
LOC_Os05g385801/11ribosomal protein L17 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07310Os.17271.1.S1_at10/1112+3601557..3604026Citrate binding protein precursor, putative, expressed
LOC_Os12g07319NANA12+3606230..3606421NA
LOC_Os12g07328NANA12+3608576..3608863NA
LOC_Os12g07340OsAffx.19528.1.S1_at10/1112+3610357..3612148hypothetical protein
LOC_Os12g07350OsAffx.7511.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07350Os.55062.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07370Os.18980.1.A1_at11/1112+3628848..3631008csAtPR5, putative, expressed
LOC_Os12g07360OsAffx.19529.1.S1_at11/1112+3632980..3633929hypothetical protein
LOC_Os12g07380Os.49394.1.S1_at10/1112+3635453..3636402expressed protein
LOC_Os12g07390Os.26939.1.A1_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_s_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_at8/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.3740.3.S1_s_at1/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.12316.1.S1_at1/1112+3640688..3643981expressed protein
LOC_Os12g07400OsAffx.19530.1.S1_at11/1112+3649452..3650472hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005840cellular_componentribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18980.1.A1_at--894--10531Chr12:3629762..3629786 (25 bp)
TTCAGGGCTCGTTTTACTGCTCGAA
LOC_Os12g07370
Os.18980.1.A1_at--958--10471Chr12:3629749..3629773 (25 bp)
TTACTGCTCGAACTGCTGGGATTGA
LOC_Os12g07370
Os.18980.1.A1_at--345--792Chr12:3629719..3629743 (25 bp)
ATGTGTTGCTTCTTGACTTTCAGGA
LOC_Os12g07370
Os.18980.1.A1_at--1102--6291Chr12:3629336..3629360 (25 bp)
GATGATGATGGGTTCGTCGTGCTCC
LOC_Os12g07370
Os.18980.1.A1_at--42--391Chr12:3629251..3629275 (25 bp)
ATCACGGTGGCGATGACACGGCTGT
LOC_Os12g07370
Os.18980.1.A1_at--42--7691Chr12:3629165..3629189 (25 bp)
GGGTTTTGTAAGCTGTCGATCATCA
LOC_Os12g07370
Os.18980.1.A1_at--711--6431Chr12:3629148..3629172 (25 bp)
GATCATCATCGCCTGGTCGTTACTT
LOC_Os12g07370
Os.18980.1.A1_at--635--6771Chr12:3629130..3629154 (25 bp)
GTTACTTCCATAGATGTAGCGCCAG
LOC_Os12g07370
Os.18980.1.A1_at--605--6271Chr12:3629118..3629142 (25 bp)
GATGTAGCGCCAGTTTAAGTCCTTG
LOC_Os12g07370
Os.18980.1.A1_at--280--9791Chr12:3629103..3629127 (25 bp)
TAAGTCCTTGCGTAATTGTGTGTAT
LOC_Os12g07370
Os.18980.1.A1_at--1126--8611Chr12:3629043..3629067 (25 bp)
TGGTGTGACTCTGGGTTCTTACTAA
LOC_Os12g07370
Target Sequence 
TTCAGGGCTCGTTTTACTGCTCGAACTGCTGGGATTGATGAGGATGTGTTGCTTCTTGACTTTCAGGATGGGNCTAAGGT
GGTGGTCGATGATGATGGGTTCGTCGTGCTCCNGCGACGTGTTGTTTCTGTTGAAGGGACAGGGAAGCTGATTCTCCGGA
TGGAGGCTACAGATCACGGTGGCGATGACACGGCTGTTGTTAAGGAAGAAATCTTCTGTGCTAGAAAGACATCAAGGAGC
CNAAGTTACTTCATGCTTGGGTTTTGTAAGCTGTCGATCATCATCGCCTGGTCGTTACTTCCATAGATGTAGCGCCAGTT
TAAGTCCTTGCGTAATTGTGTGTATTGTGTACTAGTAGTACTGCTTTGACTAAGCCAGATTGGTGTGACTCTGGGTTCTT
ACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18980.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis