Browse Element(s) Details


Os.55062.1.S1_at

Description gb:AK107402.1
DB_XREF= gi:32992611
TID=Os.55062.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.55062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-D11, full insert sequence.
FL= gb:AK107402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0735011/11tRNA-nucleotidyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07300Os.10295.1.S1_at5/1112+3590141..3596478expressed protein
LOC_Os12g07310Os.17271.1.S1_at10/1112+3601557..3604026Citrate binding protein precursor, putative, expressed
LOC_Os12g07319NANA12+3606230..3606421NA
LOC_Os12g07328NANA12+3608576..3608863NA
LOC_Os12g07340OsAffx.19528.1.S1_at10/1112+3610357..3612148hypothetical protein
LOC_Os12g07350OsAffx.7511.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07350Os.55062.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07370Os.18980.1.A1_at11/1112+3628848..3631008csAtPR5, putative, expressed
LOC_Os12g07360OsAffx.19529.1.S1_at11/1112+3632980..3633929hypothetical protein
LOC_Os12g07380Os.49394.1.S1_at10/1112+3635453..3636402expressed protein
LOC_Os12g07390Os.26939.1.A1_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_s_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_at8/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.3740.3.S1_s_at1/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.12316.1.S1_at1/1112+3640688..3643981expressed protein
LOC_Os12g07400OsAffx.19530.1.S1_at11/1112+3649452..3650472hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008033biological_processtRNA processing
GO:0005739cellular_componentmitochondrion
GO:0004810molecular_functiontRNA adenylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55062.1.S1_at--566--10131Chr12:3624929..3624953 (25 bp)
TATGCAGGTCAAGGGAGGTCCACTT
LOC_Os12g07350
Os.55062.1.S1_at--662--1031Chr12:3624940..3624964 (25 bp)
AGGGAGGTCCACTTATCGGAAAATG
LOC_Os12g07350
Os.55062.1.S1_at--110--8911Chr12:3625159..3625183 (25 bp)
TGAGAATCTTCTGCCACATCAACAT
LOC_Os12g07350
Os.55062.1.S1_at--923--3311Chr12:3625173..3625197 (25 bp)
CACATCAACATTTTGCTGGAGCATT
LOC_Os12g07350
Os.55062.1.S1_at--947--10291Chr12:3625212..3625236 (25 bp)
TTCTGATAGGGCACAAACTTAACTT
LOC_Os12g07350
Os.55062.1.S1_at--4--9611Chr12:3625231..3625255 (25 bp)
TAACTTCCCAAGTTCCTAGGAGTGC
LOC_Os12g07350
Os.55062.1.S1_at--700--6691Chr12:3625242..3625266 (25 bp)
GTTCCTAGGAGTGCAGCGTTATCTT
LOC_Os12g07350
Os.55062.1.S1_at--405--8031Chr12:3625293..3625317 (25 bp)
GGAGTATAGCTTTATCTTGGCCGTC
LOC_Os12g07350
Os.55062.1.S1_at--774--291Chr12:3625298..3625322 (25 bp)
ATAGCTTTATCTTGGCCGTCTTCTC
LOC_Os12g07350
Os.55062.1.S1_at--25--3771Chr12:3625320..3625344 (25 bp)
CTCTTCCGGGTATCCATGGTTGAAA
LOC_Os12g07350
Os.55062.1.S1_at--594--10831Chr12:3625356..3625380 (25 bp)
TTGTGGTCGAATATACTGTACTGTT
LOC_Os12g07350
Target Sequence 
TATGCAGGTCAAGGGAGGTCCACTTATCGGAAAATGGCAACAACGACTGTTGAAGTGGCAGCTTGCTTATCCAAGGGGAA
CCACGGAGGAGTGCATCGAGTGGATGAAGCAGTCGCAGTCNAAACGGCAAAAAGTATAGCGCAACNCCTGAGAATCTTCT
GCCACATCAACATTTTGCTGGAGCATTGGCAGNCTTCAGAATTCTGATAGGGCACAAACTTAACTTCCCAAGTTCCTAGG
AGTGCAGCGTTATCTTGCNTGACATGTAACANCGCGTTGTTAGGAGTATAGCTTTATCTTGGCCGTCTTCTCTTCCGGGT
ATCCATGGTTGAAATTTGCAAAATTTTGTGGTCGAATATACTGTACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis