Browse Element(s) Details


OsAffx.19529.1.S1_at

Description tigr:9640.m00666
TID=OsAffx.19529.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0736011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07328NANA12+3608576..3608863NA
LOC_Os12g07340OsAffx.19528.1.S1_at10/1112+3610357..3612148hypothetical protein
LOC_Os12g07350OsAffx.7511.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07350Os.55062.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07370Os.18980.1.A1_at11/1112+3628848..3631008csAtPR5, putative, expressed
LOC_Os12g07360OsAffx.19529.1.S1_at11/1112+3632980..3633929hypothetical protein
LOC_Os12g07380Os.49394.1.S1_at10/1112+3635453..3636402expressed protein
LOC_Os12g07390Os.26939.1.A1_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_s_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_at8/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.3740.3.S1_s_at1/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.12316.1.S1_at1/1112+3640688..3643981expressed protein
LOC_Os12g07400OsAffx.19530.1.S1_at11/1112+3649452..3650472hypothetical protein
LOC_Os12g07410OsAffx.19531.1.S1_at11/1112+3657273..3658295hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19529.1.S1_at--685--9551Chr12:3633033..3633057 (25 bp)
TCTTTTCCTGGGTTGCTTGGAACCA
LOC_Os12g07360
OsAffx.19529.1.S1_at--114--9391Chr12:3633083..3633107 (25 bp)
TCGATCGGCGGGTCGCTTACGCGAA
LOC_Os12g07360
OsAffx.19529.1.S1_at--237--10511Chr12:3633169..3633193 (25 bp)
TTCAATGCTCAAGTACTCTCTATCT
LOC_Os12g07360
OsAffx.19529.1.S1_at--973--3311Chr12:3633200..3633359 (25 bp)
CACTCGCACATCTGCAAGGTCCTAG
LOC_Os12g07360
OsAffx.19529.1.S1_at--748--2891Chr12:3633351..3633374 (24 bp)
AAGGTCCTAGCCGTGCAATTCTTCT
LOC_Os12g07360
OsAffx.19529.1.S1_at--824--111Chr12:3633367..3633391 (25 bp)
ATTCTTCTATTGGATAACCCCTTAT
LOC_Os12g07360
OsAffx.19529.1.S1_at--293--9811Chr12:3633381..3633405 (25 bp)
TAACCCCTTATTTGAGATTGACCTC
LOC_Os12g07360
OsAffx.19529.1.S1_at--929--7691Chr12:3633414..3633438 (25 bp)
GGGTCAAGGATCACCATCTGAAGAC
LOC_Os12g07360
OsAffx.19529.1.S1_at--657--2691Chr12:3633447..3633471 (25 bp)
AAGCTACTATGTGTTTCCATCGGAA
LOC_Os12g07360
OsAffx.19529.1.S1_at--172--2391Chr12:3633519..3633543 (25 bp)
AAACGATGATGAGCCAACACTCTGG
LOC_Os12g07360
OsAffx.19529.1.S1_at--1052--7931Chr12:3633547..3633897 (25 bp)
GGATATTCAAATGCCACGTCAGTCA
LOC_Os12g07360
Target Sequence 
TCTTTTCCTGGGTTGCTTGGAACCAGAGGGGTTGCCACTTGGCCGTCTACTCGATCGGCGGGTCGCTTACGCGAACCTGC
TGACCGACGAGCTCGAGTACTCGGATTTGAAAGCAGAAACATCAGGCAATGAACATTTCAATGCTCAAGTACTCTCTATC
TTGCTCGCACTCGCACATCTGCAAGGTCCTAGCCGTGCAATTCTTCTATTGGATAACCCCTTATTTGAGATTGACCTCAA
AGTGAAGGGTCAAGGATCACCATCTGAAGACAAGGCTTTAAGCTACTATGTGTTTCCATCGGAATGTCATCGCCATCGAT
TCTCCATCTGCACAGGTTTTCAAGAAACGAAAAACGATGATGAGCCAACACTCTGGCATGGATATTCAAATGCCACGTCA
GTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis