Browse Element(s) Details


Os.49394.1.S1_at

Description gb:AK064600.1
DB_XREF= gi:32974618
TID=Os.49394.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-H05, full insert sequence.
FL= gb:AK064600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0738010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07340OsAffx.19528.1.S1_at10/1112+3610357..3612148hypothetical protein
LOC_Os12g07350OsAffx.7511.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07350Os.55062.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07370Os.18980.1.A1_at11/1112+3628848..3631008csAtPR5, putative, expressed
LOC_Os12g07360OsAffx.19529.1.S1_at11/1112+3632980..3633929hypothetical protein
LOC_Os12g07380Os.49394.1.S1_at10/1112+3635453..3636402expressed protein
LOC_Os12g07390Os.26939.1.A1_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_s_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_at8/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.3740.3.S1_s_at1/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.12316.1.S1_at1/1112+3640688..3643981expressed protein
LOC_Os12g07400OsAffx.19530.1.S1_at11/1112+3649452..3650472hypothetical protein
LOC_Os12g07410OsAffx.19531.1.S1_at11/1112+3657273..3658295hypothetical protein
LOC_Os12g07420OsAffx.7512.1.S1_at11/1112+3661130..3661579hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49394.1.S1_at--57--2971Chr12:3635764..3635788 (25 bp)
AATGGCGCCACCTTCGAGGACGAGA
LOC_Os12g07380
Os.49394.1.S1_at--421--2411Chr12:3635955..3635979 (25 bp)
AAACACAGACATTCCAGTGCTGCCC
LOC_Os12g07380
Os.49394.1.S1_at--460--3651NONE
CTTCTGCGCAGCCTATGGAGACAAT
NONE
Os.49394.1.S1_at--14--5611Chr12:3636001..3636024 (24 bp)
GACAATGCAGGTCTTCACGGTGAAG
LOC_Os12g07380
Os.49394.1.S1_at--79--8991Chr12:3636020..3636044 (25 bp)
TGAAGGTGACCCAGATCACCGGCGG
LOC_Os12g07380
Os.49394.1.S1_at--222--951Chr12:3636130..3636154 (25 bp)
AGGAACGAATGCCAGACCCTAACTT
LOC_Os12g07380
Os.49394.1.S1_at--104--3731Chr12:3636148..3636172 (25 bp)
CTAACTTCGCTGCAGGCATGTGCAA
LOC_Os12g07380
Os.49394.1.S1_at--722--8271Chr12:3636162..3636186 (25 bp)
GGCATGTGCAAATTGTTCCTACCCC
LOC_Os12g07380
Os.49394.1.S1_at--968--8751Chr12:3636175..3636199 (25 bp)
TGTTCCTACCCCATTATCTTATAAA
LOC_Os12g07380
Os.49394.1.S1_at--488--9291Chr12:3636358..3636382 (25 bp)
TCCGCCGCTGACTAGTGGTGGTTTA
LOC_Os12g07380
Os.49394.1.S1_at--827--7471Chr12:3636372..3636396 (25 bp)
GTGGTGGTTTACAGGCCGCCAGTTC
LOC_Os12g07380
Target Sequence 
AATGGCGCCACCTTCGAGGACGAGACGGATCTCCCTCCTATGCCAAACACAGACATTCCAGTGCTGCCCCCTTCTGCGCA
GCCTATGGAGACAATGCAGGTCTTCACGGTGAAGGTGACCCAGATCACCGGCGGCCTCCGGTGGCCGCTCGGCGTCTACG
GCGTGGTCGCCGTGCGAGACTCCATGGACCACAAGCGCAACGTCCTCTTCCGCCGCGGCAGGAACGAATGCCAGACCCTA
ACTTCGCTGCAGGCATGTGCAAATTGTTCCTACCCCATTATCTTATAAAAGTTGCTCGGTATCAAAATTTACGACTTAAA
CATGTTGCGTTGGAATATATGTCTTAGAAATATAAGTTAATTGTTTGTTTGGAATCACAGTAAAAGATATTCATTTGGAT
GTTAACGTGATATTCGATTAAAGTTAACATTAACATTCAGGGGTTTGTCCGCCGCTGACTAGTGGTGGTTTACAGGCCGC
CAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis