Browse Element(s) Details


Os.17271.1.S1_at

Description gb:AK059809.1
DB_XREF= gi:32969827
TID=Os.17271.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-A05, full insert sequence.
FL= gb:AK059809.1 gb:AK104097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0731010/11Citrate binding protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07280Os.50556.1.S1_at11/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07280OsAffx.13726.1.S1_x_at2/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07290Os.27585.1.S1_at11/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07290OsAffx.27834.1.S1_at1/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07300Os.10295.1.S1_at5/1112+3590141..3596478expressed protein
LOC_Os12g07310Os.17271.1.S1_at10/1112+3601557..3604026Citrate binding protein precursor, putative, expressed
LOC_Os12g07319NANA12+3606230..3606421NA
LOC_Os12g07328NANA12+3608576..3608863NA
LOC_Os12g07340OsAffx.19528.1.S1_at10/1112+3610357..3612148hypothetical protein
LOC_Os12g07350OsAffx.7511.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07350Os.55062.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07370Os.18980.1.A1_at11/1112+3628848..3631008csAtPR5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17271.1.S1_at--619--8531Chr12:3603514..3603538 (25 bp)
TGGAGACCAACATCTACGACCGCTG
LOC_Os12g07310
Os.17271.1.S1_at--895--1571Chr12:3603577..3603601 (25 bp)
AGCTCACCGTCTTCATTGATGGCCG
LOC_Os12g07310
Os.17271.1.S1_at--1066--5171Chr12:3603622..3603646 (25 bp)
GCAAGGGTGGCGACTCGCACTACTT
LOC_Os12g07310
Os.17271.1.S1_at--889--9351Chr12:3603636..3603660 (25 bp)
TCGCACTACTTCAAGTTCGGCGTGT
LOC_Os12g07310
Os.17271.1.S1_at--918--8331Chr12:3603654..3603678 (25 bp)
GGCGTGTACATGCAGACGAACCCGT
LOC_Os12g07310
Os.17271.1.S1_at--439--3251Chr12:3603680..3603704 (25 bp)
CAACCGCATGGAGTCTCGCTGGAAA
LOC_Os12g07310
Os.17271.1.S1_at--1014--31Chr12:3603800..3603824 (25 bp)
ATTGTGTCAAATCTATCGGGTATAA
LOC_Os12g07310
Os.17271.1.S1_at--261--1851Chr12:3603888..3603912 (25 bp)
ACGCATGTCTCTACTTGTGTTCTTA
LOC_Os12g07310
Os.17271.1.S1_at--946--8671Chr12:3603903..3603927 (25 bp)
TGTGTTCTTACATGCGTGGAGTACT
LOC_Os12g07310
Os.17271.1.S1_at--1006--7512Chr12:3603918..3603942 (25 bp)
GTGGAGTACTATGCACATGCCTATA
LOC_Os12g07310
Os.17271.1.S1_at--677--9791Chr12:3604064..3604088 (25 bp)
TAAGAATATACTCCCTATGTTCCTG
NONE
Target Sequence 
TGGAGACCAACATCTACGACCGCTGGTTCCGCCTCAATGTCATCCACGACGTCGCCGCCTCCCAGCTCACCGTCTTCATT
GATGGCCGGGNAGAGGCTCCGCNTCGCCGGCAAGGGTGGCGACTCGCACTACTTCAAGTTCGGCGTGTACATGCAGACGA
ACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCAACAAGACATAGTAACCTAGTATCGAAATTAGA
CATAAATTGATGTTATGAATAAATCTATCTAGATTCAATAATATTAGATTGTGTCAAATCTATCGGGTATAAAGTTATTA
TATTTTAAGATGGAGATAGTACTTGGAGTAAATTATAACTGGACATTGTGTAAACACGCATGTCTCTACTTGTGTTCTTA
CATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTCAATTTTGTTTCANTCTATATATTGAGTGTACG
TATATATGATATCTTTGCATTAAGAAAAGTACTTAATTATGTGATAATACATTTATGTGTACTATCTATTGTTAAGAATA
TACTCCCTATGTTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis