Browse Element(s) Details


Os.50556.1.S1_at

Description gb:AK121826.1
DB_XREF= gi:37991449
TID=Os.50556.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50556 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099G14, full insert sequence.
FL= gb:AK121826.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0728011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07230OsAffx.31629.1.S1_at11/1112+3552653..3557399Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os12g07240OsAffx.19527.1.S1_at11/1112+3562173..3562925hypothetical protein
LOC_Os12g07250OsAffx.31630.1.S1_at11/1112+3564998..3565556hypothetical protein
LOC_Os12g07260Os.16889.1.S1_a_at11/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_x_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07270Os.53475.1.A1_at10/1112+3572432..3575996Sodium Bile acid symporter family protein, expressed
LOC_Os12g07280Os.50556.1.S1_at11/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07280OsAffx.13726.1.S1_x_at2/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07290Os.27585.1.S1_at11/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07290OsAffx.27834.1.S1_at1/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07300Os.10295.1.S1_at5/1112+3590141..3596478expressed protein
LOC_Os12g07310Os.17271.1.S1_at10/1112+3601557..3604026Citrate binding protein precursor, putative, expressed
LOC_Os12g07319NANA12+3606230..3606421NA

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50556.1.S1_at--441--8331Chr12:3581472..3581496 (25 bp)
GGCGGCAATGAGTTTCTTGACGTCA
LOC_Os12g07280
Os.50556.1.S1_at--363--9591Chr12:3581486..3581510 (25 bp)
TCTTGACGTCAAAGGGATCGCCGGC
LOC_Os12g07280
Os.50556.1.S1_at--944--2691Chr12:3581555..3581579 (25 bp)
AAGCTTCGGCGCCATGGATTTCGGA
LOC_Os12g07280
Os.50556.1.S1_at--537--4331Chr12:3581566..3581590 (25 bp)
CCATGGATTTCGGATTCGGGCAGTT
LOC_Os12g07280
Os.50556.1.S1_at--836--5031Chr12:3581585..3581609 (25 bp)
GCAGTTGGATGCTTCGCTCGCGATG
LOC_Os12g07280
Os.50556.1.S1_at--103--1491Chr12:3581623..3581647 (25 bp)
AGCAATTCGCGGGTGATCATCAGGA
LOC_Os12g07280
Os.50556.1.S1_at--753--2891Chr12:3581666..3581690 (25 bp)
AAGGTGCACATGATGCGTAGCGAGT
LOC_Os12g07280
Os.50556.1.S1_at--210--4651Chr12:3581680..3581704 (25 bp)
GCGTAGCGAGTTGCATATGATCATA
LOC_Os12g07280
Os.50556.1.S1_at--1081--1451Chr12:3581777..3581801 (25 bp)
AGAAGTTGTTCTTCCCATCTTGTAC
LOC_Os12g07280
Os.50556.1.S1_at--100--3651Chr12:3581787..3581811 (25 bp)
CTTCCCATCTTGTACCATCTTATAT
LOC_Os12g07280
Os.50556.1.S1_at--992--6971Chr12:3581798..3581822 (25 bp)
GTACCATCTTATATGCACTTCTTTA
LOC_Os12g07280
Target Sequence 
GGCGGCAATGAGTTTCTTGACGTCAAAGGGATCGCCGGCGTCGGGTCCGGCTCCGGTGGTGGGGATGAGTTCTTCTCCGC
GGGAAGCTTCGGCGCCATGGATTTCGGATTCGGGCAGTTGGATGCTTCGCTCGCGATGCTGCTGCCATCCGAGCAATTCG
CGGGTGATCATCAGGAGGAGAATGGTGACAAGTGAAGGTGCACATGATGCGTAGCGAGTTGCATATGATCATATATATAT
ATATATATATATATATATGACGTATGTATTTCATGGTGTAATAGCATTGTGTTATCTAAAGTGGAAGAAGTTGTTCTTCC
CATCTTGTACCATCTTATATGCACTTCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis