Browse Element(s) Details


Os.16889.1.S1_a_at

Description gb:AK120125.1
DB_XREF= gi:37989748
TID=Os.16889.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026D13, full insert sequence.
FL= gb:AK120125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0726011/11DNA-binding protein, putative, expressed
LOC_Os01g1732011/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07210Os.5725.1.S1_at1/1112+3541704..3543482Fructose-bisphosphate aldolase class-I family protein
LOC_Os12g07220Os.9938.1.S1_at11/1112+3548137..3551609expressed protein
LOC_Os12g07230OsAffx.31629.1.S1_at11/1112+3552653..3557399Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os12g07240OsAffx.19527.1.S1_at11/1112+3562173..3562925hypothetical protein
LOC_Os12g07250OsAffx.31630.1.S1_at11/1112+3564998..3565556hypothetical protein
LOC_Os12g07260Os.16889.1.S1_a_at11/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_x_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07270Os.53475.1.A1_at10/1112+3572432..3575996Sodium Bile acid symporter family protein, expressed
LOC_Os12g07280Os.50556.1.S1_at11/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07280OsAffx.13726.1.S1_x_at2/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07290Os.27585.1.S1_at11/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07290OsAffx.27834.1.S1_at1/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07300Os.10295.1.S1_at5/1112+3590141..3596478expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16889.1.S1_a_at--124--10792Chr01:9963227..9963251 (25 bp)
TTGATGCTGCTTGATAGTTATTCCA
LOC_Os01g17320
Os.16889.1.S1_a_at--341--6792Chr01:9963243..9963267 (25 bp)
GTTATTCCAAGAAAGGAGACGTCCA
LOC_Os01g17320
Os.16889.1.S1_a_at--1099--8052Chr01:9963257..9963281 (25 bp)
GGAGACGTCCATAATGCAGAGAAAT
LOC_Os01g17320
Os.16889.1.S1_a_at--728--3192Chr01:9963289..9963313 (25 bp)
CAAGGTGCGGCAGATGGGTTATACT
LOC_Os01g17320
Os.16889.1.S1_a_at--1061--792Chr01:9963302..9963326 (25 bp)
ATGGGTTATACTGGGAGGATTAGAC
LOC_Os01g17320
Os.16889.1.S1_a_at--654--7932Chr01:9963318..9963342 (25 bp)
GGATTAGACAGTATCAGCTGCTTCT
LOC_Os01g17320
Os.16889.1.S1_a_at--111--10032Chr01:9963322..9963346 (25 bp)
TAGACAGTATCAGCTGCTTCTTGAG
LOC_Os01g17320
Os.16889.1.S1_a_at--515--5132Chr01:9963359..9963383 (25 bp)
GCAAAGACCCCACCTTATGGATTCA
LOC_Os01g17320
Os.16889.1.S1_a_at--536--5812Chr01:9963364..9963388 (25 bp)
GACCCCACCTTATGGATTCAAGGAG
LOC_Os01g17320
Os.16889.1.S1_a_at--524--6172Chr01:9963388..9963412 (25 bp)
GAGGATGAAGGCTGATGACATTTTC
LOC_Os01g17320
Os.16889.1.S1_a_at--405--5672Chr01:9963404..9963428 (25 bp)
GACATTTTCCCCAATAGGGCTGTGG
LOC_Os01g17320
Target Sequence 
TTGATGCTGCTTGATAGTTATTCCAAGAAAGGAGACGTCCATAATGCAGAGAAATTGTTCAGCAAGGTGCGGCAGATGGG
TTATACTGGGAGGATTAGACAGTATCAGCTGCTTCTTGAGGCATATCTGAATGCAAAGACCCCACCTTATGGATTCAAGG
AGAGGATGAAGGCTGATGACATTTTCCCCAATAGGGCTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16889.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis