Browse Element(s) Details


OsAffx.19527.1.S1_at

Description tigr:9640.m00651
TID=OsAffx.19527.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0724011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07200NANA12+3537613..3538138hypothetical protein
LOC_Os12g07210Os.5725.1.S1_at1/1112+3541704..3543482Fructose-bisphosphate aldolase class-I family protein
LOC_Os12g07220Os.9938.1.S1_at11/1112+3548137..3551609expressed protein
LOC_Os12g07230OsAffx.31629.1.S1_at11/1112+3552653..3557399Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os12g07240OsAffx.19527.1.S1_at11/1112+3562173..3562925hypothetical protein
LOC_Os12g07250OsAffx.31630.1.S1_at11/1112+3564998..3565556hypothetical protein
LOC_Os12g07260Os.16889.1.S1_a_at11/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_x_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07270Os.53475.1.A1_at10/1112+3572432..3575996Sodium Bile acid symporter family protein, expressed
LOC_Os12g07280Os.50556.1.S1_at11/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07280OsAffx.13726.1.S1_x_at2/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07290Os.27585.1.S1_at11/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07290OsAffx.27834.1.S1_at1/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19527.1.S1_at--402--8294Chr12:12372834..12372855 (22 bp)
GGCTTCGGCTATGTGTTGCCAGTTG
NONE
OsAffx.19527.1.S1_at--1140--6911Chr12:3562405..3562429 (25 bp)
GTAGGACCACCAACTTGACCACAGA
LOC_Os12g07240
OsAffx.19527.1.S1_at--559--10291Chr12:3562371..3562395 (25 bp)
TTTCCAGCCACATCACCAGAAAAGC
LOC_Os12g07240
OsAffx.19527.1.S1_at--1090--5611Chr12:3562330..3562354 (25 bp)
GACATAGGACCTGTACCCATATTCA
LOC_Os12g07240
OsAffx.19527.1.S1_at--914--1811Chr12:3562316..3562340 (25 bp)
ACCCATATTCATGGTGATATAGCCA
LOC_Os12g07240
OsAffx.19527.1.S1_at--704--8831Chr12:3562302..3562326 (25 bp)
TGATATAGCCAGTCCAGCCACCTAT
LOC_Os12g07240
OsAffx.19527.1.S1_at--607--1691Chr12:3562287..3562311 (25 bp)
AGCCACCTATAGTCCTGGTTTTGAA
LOC_Os12g07240
OsAffx.19527.1.S1_at--527--5971Chr12:3562261..3562285 (25 bp)
GAGAACTTGCTCTTGGTATTCATAC
LOC_Os12g07240
OsAffx.19527.1.S1_at--195--10111Chr12:3562245..3562269 (25 bp)
TATTCATACTGACTGGGTTAGCCGA
LOC_Os12g07240
OsAffx.19527.1.S1_at--691--10451Chr12:3562228..3562252 (25 bp)
TTAGCCGATGGTGTGATGTCCAAAC
LOC_Os12g07240
OsAffx.19527.1.S1_at--608--7271Chr12:3562211..3562235 (25 bp)
GTCCAAACCAGTGATCATAACTATG
LOC_Os12g07240
Target Sequence 
GGCTTCGGCTATGTGTTGCCAGTTGGTGGTAGGACCACCAACTTGACCACAGAACAAAAATTTTTCCAGCCACATCACCA
GAAAAGCTATGTGTTCTCTGGGGGACATAGGACCTGTACCCATATTCATGGTGATATAGCCAGTCCAGCCACCTATAGTC
CTGGTTTTGAAAGAGAACTTGCTCTTGGTATTCATACTGACTGGGTTAGCCGATGGTGTGATGTCCAAACCAGTGATCAT
AACTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis