Browse Element(s) Details


Os.27585.1.S1_at

Description gb:AK067033.1
DB_XREF= gi:32977051
TID=Os.27585.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27585 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089J22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089J22, full insert sequence.
FL= gb:AK067033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0729011/11Alpha4-fucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07240OsAffx.19527.1.S1_at11/1112+3562173..3562925hypothetical protein
LOC_Os12g07250OsAffx.31630.1.S1_at11/1112+3564998..3565556hypothetical protein
LOC_Os12g07260Os.16889.1.S1_a_at11/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_x_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07270Os.53475.1.A1_at10/1112+3572432..3575996Sodium Bile acid symporter family protein, expressed
LOC_Os12g07280Os.50556.1.S1_at11/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07280OsAffx.13726.1.S1_x_at2/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07290Os.27585.1.S1_at11/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07290OsAffx.27834.1.S1_at1/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07300Os.10295.1.S1_at5/1112+3590141..3596478expressed protein
LOC_Os12g07310Os.17271.1.S1_at10/1112+3601557..3604026Citrate binding protein precursor, putative, expressed
LOC_Os12g07319NANA12+3606230..3606421NA
LOC_Os12g07328NANA12+3608576..3608863NA
LOC_Os12g07340OsAffx.19528.1.S1_at10/1112+3610357..3612148hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0017083molecular_function4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27585.1.S1_at--691--3651Chr12:3585691..3585715 (25 bp)
CTTCATTCCTCCCAATTCTATTATA
LOC_Os12g07290
Os.27585.1.S1_at--29--9711Chr12:3585722..3585746 (25 bp)
TCAAAATTCAGCTCACTCCGTGAGT
LOC_Os12g07290
Os.27585.1.S1_at--540--3331Chr12:3585735..3585759 (25 bp)
CACTCCGTGAGTTGGCATCATATGT
LOC_Os12g07290
Os.27585.1.S1_at--1152--5551Chr12:3585760..3585784 (25 bp)
GAAAGCTGTTGCAAATGATCCCGTA
LOC_Os12g07290
Os.27585.1.S1_at--198--2991Chr12:3585773..3585797 (25 bp)
AATGATCCCGTAGCCTATGCAGAAT
LOC_Os12g07290
Os.27585.1.S1_at--411--7051Chr12:3585828..3585852 (25 bp)
GTAACTTTGGAAGGTCGCGTGAAAT
LOC_Os12g07290
Os.27585.1.S1_at--478--7231Chr12:3585841..3585865 (25 bp)
GTCGCGTGAAATGAGCCTTGACACA
LOC_Os12g07290
Os.27585.1.S1_at--338--9191Chr12:3585867..3585891 (25 bp)
TGCCTTGCCGACTTTGTGAACTAGT
LOC_Os12g07290
Os.27585.1.S1_at--243--7411Chr12:3585932..3586087 (25 bp)
GTGATAGACTGGACATGTACCTAGT
LOC_Os12g07290
Os.27585.1.S1_at--243--8931Chr12:3586294..3586318 (25 bp)
TGACCATCTGTCATACTGATGTCTT
LOC_Os12g07290
Os.27585.1.S1_at--1041--2431Chr12:3586355..3586379 (25 bp)
AAAATGTGTATGCTGCTTAATGCCT
LOC_Os12g07290
Target Sequence 
CTTCATTCCTCCCAATTCTATTATAGATGCCTCAAAATTCAGCTCACTCCGTGAGTTGGCATCATATGTGAAAGCTGTTG
CAAATGATCCCGTAGCCTATGCAGAATACCATGCATGGAGGAGGTGTGGTNCCCTGGGTAACTTTGGAAGGTCGCGTGAA
ATGAGCCTTGACACACTGCCTTGCCGACTTTGTGAACTAGTTAGTAAGAGAGGTGGTAGAAATGCAGATGCATTGTGAAT
TGTGATAGACTGGACATGTACCTAGTTGGTATGTCAATGAAGATGAAGTGCTCGGATATCAGAAGAAAATAGTTTGATAT
TGTTGTCATAACACACTTTGTTTCTTTTGCGTTTTTTGAATTTCTTTTTGTCTCCAGAGTTGAGAGATGTATACAGTAGT
TAGGGATTCATGTTTGTAGGAAAAAAAAAAGGTATGAATGCNCATTATATCGCTAATATTATNCGGTCTTTATGACCATC
TGTCATACTGATGTCTTGAAGAAATGTGATAATNCAGAATCAGCATTAACTANAAAATGTGTATGCTGCTTAATGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis