Browse Element(s) Details


OsAffx.31630.1.S1_at

Description tigr:9640.m00652
TID=OsAffx.31630.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0725011/11hypothetical protein
LOC_Os01g173303/11Eukaryotic translation initiation factor 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07210Os.5725.1.S1_at1/1112+3541704..3543482Fructose-bisphosphate aldolase class-I family protein
LOC_Os12g07220Os.9938.1.S1_at11/1112+3548137..3551609expressed protein
LOC_Os12g07230OsAffx.31629.1.S1_at11/1112+3552653..3557399Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os12g07240OsAffx.19527.1.S1_at11/1112+3562173..3562925hypothetical protein
LOC_Os12g07250OsAffx.31630.1.S1_at11/1112+3564998..3565556hypothetical protein
LOC_Os12g07260Os.16889.1.S1_a_at11/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_x_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07270Os.53475.1.A1_at10/1112+3572432..3575996Sodium Bile acid symporter family protein, expressed
LOC_Os12g07280Os.50556.1.S1_at11/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07280OsAffx.13726.1.S1_x_at2/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07290Os.27585.1.S1_at11/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07290OsAffx.27834.1.S1_at1/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07300Os.10295.1.S1_at5/1112+3590141..3596478expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31630.1.S1_at--11--3832Chr12:3565028..3565052 (25 bp)
CTCCAAAATCACAGAGTTGAGCATA
LOC_Os12g07250
OsAffx.31630.1.S1_at--513--3312Chr12:3565037..3565061 (25 bp)
CACAGAGTTGAGCATATAGGAGCAA
LOC_Os12g07250
OsAffx.31630.1.S1_at--276--8072Chr12:3565055..3565079 (25 bp)
GGAGCAATTAGCAAACAATGCCAGC
LOC_Os12g07250
OsAffx.31630.1.S1_at--646--2231Chr12:3565069..3565093 (25 bp)
ACAATGCCAGCATATAAGTCCATCT
LOC_Os12g07250
OsAffx.31630.1.S1_at--889--4411Chr12:3565074..3565098 (25 bp)
GCCAGCATATAAGTCCATCTGACCA
LOC_Os12g07250
OsAffx.31630.1.S1_at--286--10151Chr12:3565081..3565105 (25 bp)
TATAAGTCCATCTGACCAAACTATA
LOC_Os12g07250
OsAffx.31630.1.S1_at--1099--10211Chr12:3565108..3565132 (25 bp)
TATTGCGTGCAAACAGGGAACCGAA
LOC_Os12g07250
OsAffx.31630.1.S1_at--994--5131Chr12:3565116..3565140 (25 bp)
GCAAACAGGGAACCGAAGAGGTCAT
LOC_Os12g07250
OsAffx.31630.1.S1_at--626--7431Chr12:3565163..3565187 (25 bp)
GTGTTTCAGGCAAACTATTGCAGGA
LOC_Os12g07250
OsAffx.31630.1.S1_at--175--8631Chr12:3565198..3565391 (25 bp)
TGGGGAGCTTCTGTTCACCCGCAGA
LOC_Os12g07250
OsAffx.31630.1.S1_at--900--8051Chr12:3565502..3565526 (25 bp)
GGAGAGCGTGTTCCGAGACATGAGC
LOC_Os12g07250
Target Sequence 
CTCCAAAATCACAGAGTTGAGCATATAGGAGCAATTAGCAAACAATGCCAGCATATAAGTCCATCTGACCAAACTATATA
TATTGCGTGCAAACAGGGAACCGAAGAGGTCATCTCAGATGTTCTTGGTGTGGAAGTGTTTCAGGCAAACTATTGCAGGA
AACATCCTGGTGGGGAGCTTCTGTTCACCCGCAGACGCCATCAACCGGGGCAGCGAGGTGGTGGCCGCCGGCATGGCGGT
GAACGACTGGGCGGCGTTCTGCGGCGCCGACACGACGGCGACGGAGCTGTCCGTGGTGGCGTGGTGGAGAGCGTGTTCCG
AGACATGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis