Browse Element(s) Details


OsAffx.15013.1.S1_at

Description tigr:9633.m03592
TID=OsAffx.15013.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cation efflux family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3867011/11cation efflux family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38620OsAffx.15011.1.S1_at11/115+22565231..22565851Zinc finger, C2H2 type family protein
LOC_Os05g38630Os.11088.1.S1_at11/115+22566108..22569323Ras-related protein ARA-3, putative, expressed
LOC_Os05g38640Os.9745.1.S1_at11/115+22573654..22574824Histone H2A, putative, expressed
LOC_Os05g38650OsAffx.15012.1.S1_x_at11/115+22578592..22579023hypothetical protein
LOC_Os05g38660Os.55283.1.S1_at11/115+22582154..22582816expressed protein
LOC_Os05g38670OsAffx.15013.1.S1_at11/115+22587742..22591452cation efflux family protein
LOC_Os05g38680OsAffx.15014.1.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g38680Os.28394.2.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g38690OsAffx.27228.1.S1_at11/115+22615360..22616469expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0016020cellular_componentmembrane
GO:0008324molecular_functioncation transporter activity
GO:0015562molecular_functionefflux permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15013.1.S1_at--154--3031Chr05:22589852..22589876 (25 bp)
AATCCATACAGGTACCCAATTGGTA
LOC_Os05g38670
OsAffx.15013.1.S1_at--299--2771Chr05:22589878..22589987 (25 bp)
AAGACGCATGCAACCTTTGGGAATA
LOC_Os05g38670
OsAffx.15013.1.S1_at--699--10812Chr05:22590135..22590157 (23 bp)
TTGGGAATACTTGTTTTTGCTTCTG
LOC_Os05g38670
OsAffx.15013.1.S1_at--362--6791Chr05:22590157..22590181 (25 bp)
GTTATGGCAACGCTTGGCCTTCAAA
LOC_Os05g38670
OsAffx.15013.1.S1_at--626--5251Chr05:22590190..22590214 (25 bp)
GAATCTACACGCTCATTGTTTTATG
LOC_Os05g38670
OsAffx.15013.1.S1_at--979--7931Chr05:22590628..22590652 (25 bp)
GGATACTTTCCGCTTGACAAAAGAG
LOC_Os05g38670
OsAffx.15013.1.S1_at--498--6511Chr05:22590671..22590695 (25 bp)
GATATCATGCTTTCTGTTACATCGG
LOC_Os05g38670
OsAffx.15013.1.S1_at--114--6771Chr05:22590686..22590710 (25 bp)
GTTACATCGGTGAAGCTCCTACTGG
LOC_Os05g38670
OsAffx.15013.1.S1_at--172--4791Chr05:22590700..22590724 (25 bp)
GCTCCTACTGGTTGTATATTGCCGT
LOC_Os05g38670
OsAffx.15013.1.S1_at--217--6891Chr05:22590713..22590737 (25 bp)
GTATATTGCCGTTCATTCACCAATG
LOC_Os05g38670
OsAffx.15013.1.S1_at--274--3191Chr05:22590733..22591113 (25 bp)
CAATGAAATTCTGGCGATCTACACA
LOC_Os05g38670
Target Sequence 
AATCCATACAGGTACCCAATTGGTAAAAGACGCATGCAACCTTTGGGAATACTTGTTTTTGCTTCTGTTATGGCAACGCT
TGGCCTTCAAATTATCCTAGAATCTACACGCTCATTGTTTTATGATGGGGATACTTTCCGCTTGACAAAAGAGCAGGAGA
AGTGGGTTGTGGATATCATGCTTTCTGTTACATCGGTGAAGCTCCTACTGGTTGTATATTGCCGTTCATTCACCAATGAA
ATTCTGGCGATCTACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis