Browse Element(s) Details


OsAffx.15012.1.S1_x_at

Description tigr:9633.m03590
TID=OsAffx.15012.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3865011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38600OsAffx.15010.1.S1_at11/115+22555310..22555834Zinc finger, C2H2 type family protein
LOC_Os05g38610Os.3438.1.S1_at10/115+22558442..22561195Clathrin adaptor complex small chain family protein, expressed
LOC_Os05g38620OsAffx.15011.1.S1_at11/115+22565231..22565851Zinc finger, C2H2 type family protein
LOC_Os05g38630Os.11088.1.S1_at11/115+22566108..22569323Ras-related protein ARA-3, putative, expressed
LOC_Os05g38640Os.9745.1.S1_at11/115+22573654..22574824Histone H2A, putative, expressed
LOC_Os05g38650OsAffx.15012.1.S1_x_at11/115+22578592..22579023hypothetical protein
LOC_Os05g38660Os.55283.1.S1_at11/115+22582154..22582816expressed protein
LOC_Os05g38670OsAffx.15013.1.S1_at11/115+22587742..22591452cation efflux family protein
LOC_Os05g38680OsAffx.15014.1.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g38680Os.28394.2.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15012.1.S1_x_at--933--1831Chr05:22578623..22578647 (25 bp)
ACGCGGTGGAGAGACAACAGCAGTT
LOC_Os05g38650
OsAffx.15012.1.S1_x_at--163--2491Chr05:22578638..22578662 (25 bp)
AACAGCAGTTGCTGGCGGGCCTCGC
LOC_Os05g38650
OsAffx.15012.1.S1_x_at--552--8331Chr05:22578664..22578688 (25 bp)
GGCGACGGAGGGTTCACCGGTGACG
LOC_Os05g38650
OsAffx.15012.1.S1_x_at--1062--6111Chr05:22578671..22578695 (25 bp)
GAGGGTTCACCGGTGACGGAGGCGA
LOC_Os05g38650
OsAffx.15012.1.S1_x_at--325--931Chr05:22578774..22578798 (25 bp)
AGGCAGCAGCAGTTCCTGGCGAGAT
LOC_Os05g38650
OsAffx.15012.1.S1_x_at--514--3411Chr05:22578777..22578801 (25 bp)
CAGCAGCAGTTCCTGGCGAGATGGA
LOC_Os05g38650
OsAffx.15012.1.S1_x_at--219--3451Chr05:22578783..22578807 (25 bp)
CAGTTCCTGGCGAGATGGAGCGCAA
LOC_Os05g38650
OsAffx.15012.1.S1_x_at--1029--4411Chr05:22578854..22578878 (25 bp)
GCCTCGTCAATGTCGTCCGACGGCG
LOC_Os05g38650
OsAffx.15012.1.S1_x_at--13--1671Chr05:22578891..22578915 (25 bp)
AGCCGCCGGTGGTTCCGTTGCTCCG
LOC_Os05g38650
OsAffx.15012.1.S1_x_at--723--4491Chr05:22578895..22578919 (25 bp)
GCCGGTGGTTCCGTTGCTCCGCGCA
LOC_Os05g38650
OsAffx.15012.1.S1_x_at--1071--8231Chr05:22578944..22578968 (25 bp)
GGCAGCGGCAGTGGGCTCATCCGGC
LOC_Os05g38650
Target Sequence 
ACGCGGTGGAGAGACAACAGCAGTTGCTGGCGGGCCTCGCCGGCGACGGAGGGTTCACCGGTGACGGAGGCGAAGGGGGA
CGTGGTGAAGAGGCAGCAGCAGCTGCTGGCGAGCCTCGCCGGCGACGAAGACGGAGAGGGACGCGGTGGAGAGGCAGCAG
CAGTTCCTGGCGAGATGGAGCGCAAGCCGCCGCCGCCGTGAGGCCTCCTCGACGACCTCACCTCCGCCTCCGCCTCGTCA
ATGTCGTCCGACGGCGGCAGACAGGGGCAGCCGCCGGTGGTTCCGTTGCTCCGCGCACCCGCGCACCCAAATGCCCTCGT
CGGCAGCGGCAGTGGGCTCATCCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15012.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis