Browse Element(s) Details


Os.55283.1.S1_at

Description gb:AK107796.1
DB_XREF= gi:32993005
TID=Os.55283.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-D10, full insert sequence.
FL= gb:AK107796.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3866011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38610Os.3438.1.S1_at10/115+22558442..22561195Clathrin adaptor complex small chain family protein, expressed
LOC_Os05g38620OsAffx.15011.1.S1_at11/115+22565231..22565851Zinc finger, C2H2 type family protein
LOC_Os05g38630Os.11088.1.S1_at11/115+22566108..22569323Ras-related protein ARA-3, putative, expressed
LOC_Os05g38640Os.9745.1.S1_at11/115+22573654..22574824Histone H2A, putative, expressed
LOC_Os05g38650OsAffx.15012.1.S1_x_at11/115+22578592..22579023hypothetical protein
LOC_Os05g38660Os.55283.1.S1_at11/115+22582154..22582816expressed protein
LOC_Os05g38670OsAffx.15013.1.S1_at11/115+22587742..22591452cation efflux family protein
LOC_Os05g38680OsAffx.15014.1.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g38680Os.28394.2.S1_s_at11/115+22594830..22596061uncharacterized plant-specific domain TIGR01589 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55283.1.S1_at--2--6771Chr05:22582218..22582242 (25 bp)
GTTAAATCGCGATCACCGCAGCAAG
LOC_Os05g38660
Os.55283.1.S1_at--157--4131Chr05:22582234..22582258 (25 bp)
CGCAGCAAGCCATGTCGTCGCAGCG
LOC_Os05g38660
Os.55283.1.S1_at--448--9411Chr05:22582297..22582321 (25 bp)
TCGTGCTCCCGGATAACTTCGCCGA
LOC_Os05g38660
Os.55283.1.S1_at--191--4171Chr05:22582556..22582580 (25 bp)
CGCCGTGCTTAGTACTTGCGGCTAA
LOC_Os05g38660
Os.55283.1.S1_at--983--7011Chr05:22582567..22582591 (25 bp)
GTACTTGCGGCTAAATCGTCATGTG
LOC_Os05g38660
Os.55283.1.S1_at--554--3051Chr05:22582580..22582604 (25 bp)
AATCGTCATGTGTATGGCCGGTTAA
LOC_Os05g38660
Os.55283.1.S1_at--1107--9731Chr05:22582602..22582626 (25 bp)
TAATTTTCGTGGTTAAGCGCGGCAC
LOC_Os05g38660
Os.55283.1.S1_at--1025--9711Chr05:22582635..22582659 (25 bp)
TCAACCGATGTCTCGCTTGTTCTCT
LOC_Os05g38660
Os.55283.1.S1_at--625--3671Chr05:22582722..22582746 (25 bp)
CTTTTCTCTCTTTTGGTGAGGACAT
LOC_Os05g38660
Os.55283.1.S1_at--963--3111Chr05:22582763..22582787 (25 bp)
AATATTATGCTTCCTTTTTCCACAC
LOC_Os05g38660
Os.55283.1.S1_at--1036--9231Chr05:22582774..22582798 (25 bp)
TCCTTTTTCCACACGATGACTGAAT
LOC_Os05g38660
Target Sequence 
GTTAAATCGCGATCACCGCAGCAAGCCATGTCGTCGCAGCGGCCCGGCCGTCACCAGCGGAGGGCGTCGCAGAGCGTGTT
CGTGCTCCCGGATAACTTCGCCGACCTCGACGACGTGCCGGCCGGCGCCGGCGGCGCCGGCGAGGACGGCCGGAAGGGCG
CCGCCGCGACGGCGGACGCGGCCGGCGGGCAGCAGCAGGCTCGCCCATCGCCGGCGGCGCGCCACCGGAGGGCGATGTCG
GTGGCCGTGGCGTCGTCCAGGGAGCTGGAGATGATCAAGGAGGACATGGGCAGCTACAAGATCGGCGCCTGATGCAGCAT
CGATCGCACACACAGGGGCGCCGTGCTTAGTACTTGCGGCTAAATCGTCATGTGTATGGCCGGTTAATTTTCGTGGTTAA
GCGCGGCACGCGTCGCGTCAACCGATGTCTCGCTTGTTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTCTCTTTTGGTGAGGACATGTAAGATGGGAGATGTAATATTATGCTTCCT
TTTTCCACACGATGACTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis