Browse Element(s) Details


Os.38581.1.S1_s_at

Description gb:AU075856
DB_XREF= gi:5455463
DB_XREF=AU075856
CLONE=S20534_2Z
TID=Os.38581.1
CNT=24
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38581 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_187864.1 (A.thaliana) heat shock protein 70 (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3853011/11Heat shock cognate 70 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38480Os.20329.1.S1_at11/115+22490960..22494506Kinesin motor domain containing protein, expressed
LOC_Os05g38490NANA5+22497152..22503258Growth regulator protein, putative
LOC_Os05g38500OsAffx.27225.1.S1_s_at11/115+22504078..22505833Fasciclin domain containing protein
LOC_Os05g38500OsAffx.27225.1.S1_at11/115+22504078..22505833Fasciclin domain containing protein
LOC_Os05g38510OsAffx.27226.1.S1_at11/115+22510059..22512985hypothetical protein
LOC_Os05g38520Os.9260.1.S1_at11/115+22513239..2251530060S ribosomal protein L36-2, putative, expressed
LOC_Os05g38520Os.57302.1.S1_at11/115+22513239..2251530060S ribosomal protein L36-2, putative, expressed
LOC_Os05g38530Os.38581.1.S1_s_at11/115+22516184..22519363Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38530Os.57477.1.S1_x_at1/115+22516184..22519363Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38540OsAffx.13097.1.S1_s_at11/115+22527206..22531921transposon protein, putative, Mutator sub-class
LOC_Os05g38550Os.37932.1.A1_x_at11/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38550Os.12586.1.S1_at10/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38560OsAffx.27227.1.S1_at11/115+22541931..22542431Histone H2B, putative
LOC_Os05g38560OsAffx.10929.1.S1_x_at1/115+22541931..22542431Histone H2B, putative
LOC_Os05g38570Os.52526.1.S1_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.7480.1.S1_x_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.52655.2.S1_at1/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38581.1.S1_s_at--683--1031Chr05:22516485..22516509 (25 bp)
AGGTCGACTAAACTGCTCCATGGTT
LOC_Os05g38530
Os.38581.1.S1_s_at--1056--811Chr05:22516466..22516490 (25 bp)
ATGGTTGCCGCTCACGATGTTCTTT
LOC_Os05g38530
Os.38581.1.S1_s_at--682--10871Chr05:22516426..22516450 (25 bp)
TTGGCTGTGGCTTGATCTGTCGTAT
LOC_Os05g38530
Os.38581.1.S1_s_at--283--6871Chr05:22516405..22516429 (25 bp)
GTATCGTCGTTGCTTCTGGTAGAAA
LOC_Os05g38530
Os.38581.1.S1_s_at--214--5451Chr05:22516358..22516382 (25 bp)
GAACGCTGTGGTTTACCTGTGGTTT
LOC_Os05g38530
Os.38581.1.S1_s_at--189--1771Chr05:22516344..22516368 (25 bp)
ACCTGTGGTTTGGAACTTTCATCTG
LOC_Os05g38530
Os.38581.1.S1_s_at--737--4891Chr05:22516315..22516339 (25 bp)
GCTTTTGGATATGGCGATGCATTCT
LOC_Os05g38530
Os.38581.1.S1_s_at--758--8891Chr05:22516277..22516301 (25 bp)
TGAGTAACTCTGTTTTGCTCCGTTC
LOC_Os05g38530
Os.38581.1.S1_s_at--14--10351Chr05:22516244..22516268 (25 bp)
TTTATCTGTGCAATGCTCGACTCTG
LOC_Os05g38530
Os.38581.1.S1_s_at--674--2991Chr05:22516233..22516257 (25 bp)
AATGCTCGACTCTGGGCCAAACGGG
LOC_Os05g38530
Os.38581.1.S1_s_at--20--7711Chr05:22516211..22516235 (25 bp)
GGGTCTCTCCTTCGACAGCTTTGAT
LOC_Os05g38530
Target Sequence 
AGGTCGACTAAACTGCTCCATGGTTGCCGCTCACGATGTTCTTTCTGCCATCGTCTCTTTTGGCTGTGGCTTGATCTGTC
GTATCGTCGTTGCTTCTGGTAGAAATTAAGTGAGAGTTGTGGGGGAGGAACGCTGTGGTTTACCTGTGGTTTGGAACTTT
CATCTGAACAGCTTTTGGATATGGCGATGCATTCTTAGTTAATTATTGTGAGTAACTCTGTTTTGCTCCGTTCTTTCTTT
TTTTATCTGTGCAATGCTCGACTCTGGGCCAAACGGGTCTCTCCTTCGACAGCTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38581.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis