Browse Element(s) Details


OsAffx.27225.1.S1_s_at

Description tigr:9633.m03572
TID=OsAffx.27225.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plant protein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3850011/11Fasciclin domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38470Os.50007.1.S1_at11/115+22484929..22487785expressed protein
LOC_Os05g38470Os.50007.1.S2_at11/115+22484929..22487785expressed protein
LOC_Os05g38480Os.20329.1.S1_at11/115+22490960..22494506Kinesin motor domain containing protein, expressed
LOC_Os05g38490NANA5+22497152..22503258Growth regulator protein, putative
LOC_Os05g38500OsAffx.27225.1.S1_s_at11/115+22504078..22505833Fasciclin domain containing protein
LOC_Os05g38500OsAffx.27225.1.S1_at11/115+22504078..22505833Fasciclin domain containing protein
LOC_Os05g38510OsAffx.27226.1.S1_at11/115+22510059..22512985hypothetical protein
LOC_Os05g38520Os.9260.1.S1_at11/115+22513239..2251530060S ribosomal protein L36-2, putative, expressed
LOC_Os05g38520Os.57302.1.S1_at11/115+22513239..2251530060S ribosomal protein L36-2, putative, expressed
LOC_Os05g38530Os.38581.1.S1_s_at11/115+22516184..22519363Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38530Os.57477.1.S1_x_at1/115+22516184..22519363Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38540OsAffx.13097.1.S1_s_at11/115+22527206..22531921transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0007155biological_processcell adhesion
GO:0009825biological_processmultidimensional cell growth
GO:0009897cellular_componentexternal side of plasma membrane
GO:0031225cellular_componentanchored to membrane
GO:0005515molecular_functionprotein binding
GO:0030247molecular_functionpolysaccharide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27225.1.S1_s_at--65--5251Chr05:22505212..22505236 (25 bp)
GAATCACCCGAGAGCGCGCCGACAA
LOC_Os05g38500
OsAffx.27225.1.S1_s_at--139--6652Chr05:22505361..22505385 (25 bp)
GTTGTATCTACTACTACTACCACTA
LOC_Os05g38500
OsAffx.27225.1.S1_s_at--527--1711Chr05:22505379..22505403 (25 bp)
ACCACTACTGCTACCTCTGGTATGA
LOC_Os05g38500
OsAffx.27225.1.S1_s_at--82--4291Chr05:22505392..22505416 (25 bp)
CCTCTGGTATGAGATCCGGTTCGTT
LOC_Os05g38500
OsAffx.27225.1.S1_s_at--878--671Chr05:22505400..22505424 (25 bp)
ATGAGATCCGGTTCGTTTGCTTGTC
LOC_Os05g38500
OsAffx.27225.1.S1_s_at--626--6711Chr05:22505410..22505434 (25 bp)
GTTCGTTTGCTTGTCCATTACCATC
LOC_Os05g38500
OsAffx.27225.1.S1_s_at--1154--131Chr05:22505426..22505450 (25 bp)
ATTACCATCCTTGTTGAGCTCGAAT
LOC_Os05g38500
OsAffx.27225.1.S1_s_at--948--8912Chr05:22505440..22505464 (25 bp)
TGAGCTCGAATTTTTGCTTTTCTTT
LOC_Os05g38500
OsAffx.27225.1.S1_s_at--1144--10351Chr05:22505478..22505502 (25 bp)
TTTTTGTTATAACCTGTACACTGGG
LOC_Os05g38500
OsAffx.27225.1.S1_s_at--1115--10371Chr05:22505581..22505605 (25 bp)
TTTTCTTTTTGTTCTTACCAGCTGC
LOC_Os05g38500
OsAffx.27225.1.S1_s_at--1116--10551Chr05:22505592..22505616 (25 bp)
TTCTTACCAGCTGCTTCATGTTGGC
LOC_Os05g38500
Target Sequence 
GAATCACCCGAGAGCGCGCCGACAAAGCTATCGTCGCCGCCGGCGCTGCGCGACACCGCCGGCAACGCGAACCACACGGC
GGCGGCTGCGGCGGTGGCGGCAGCGGCGGCGACGACGAAACCGACAATTGGCCGGTGGTGTATAGCATTGTTGTATCTAC
TACTACTACCACTACTGCTACCTCTGGTATGAGATCCGGTTCGTTTGCTTGTCCATTACCATCCTTGTTGAGCTCGAATT
TTTGCTTTTCTTTTTTCTTTTCTTTTTTTTTGTTATAACCTGTACACTGGGGAAGGGGAGAAGTTTGAGAAGAGGTGAAT
TCAGATTGAGCTGCAAAGCAGCATTATTATTATTATTTTCGCTTTCTTTTTTTCTTTTTGTTCTTACCAGCTGCTTCATG
TTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27225.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis