Browse Element(s) Details


Os.9260.1.S1_at

Description gb:AK058918.1
DB_XREF= gi:32968936
TID=Os.9260.1
CNT=66
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.9260 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-B04, full insert sequence.
FL= gb:AK058918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3852011/1160S ribosomal protein L36-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38480Os.20329.1.S1_at11/115+22490960..22494506Kinesin motor domain containing protein, expressed
LOC_Os05g38490NANA5+22497152..22503258Growth regulator protein, putative
LOC_Os05g38500OsAffx.27225.1.S1_s_at11/115+22504078..22505833Fasciclin domain containing protein
LOC_Os05g38500OsAffx.27225.1.S1_at11/115+22504078..22505833Fasciclin domain containing protein
LOC_Os05g38510OsAffx.27226.1.S1_at11/115+22510059..22512985hypothetical protein
LOC_Os05g38520Os.9260.1.S1_at11/115+22513239..2251530060S ribosomal protein L36-2, putative, expressed
LOC_Os05g38520Os.57302.1.S1_at11/115+22513239..2251530060S ribosomal protein L36-2, putative, expressed
LOC_Os05g38530Os.38581.1.S1_s_at11/115+22516184..22519363Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38530Os.57477.1.S1_x_at1/115+22516184..22519363Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os05g38540OsAffx.13097.1.S1_s_at11/115+22527206..22531921transposon protein, putative, Mutator sub-class
LOC_Os05g38550Os.37932.1.A1_x_at11/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os05g38550Os.12586.1.S1_at10/115+22532672..22537121Ubiquitin-conjugating enzyme E2 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9260.1.S1_at--834--7691Chr05:22514201..22514225 (25 bp)
GGGTGACCTTTGTCAGGAACTTGAT
LOC_Os05g38520
Os.9260.1.S1_at--541--9131Chr05:22514235..22514259 (25 bp)
TGCTGGATTTGCTCCCTATGAGAAG
LOC_Os05g38520
Os.9260.1.S1_at--933--3851Chr05:22514267..22514291 (25 bp)
CTGAGCTTCTCAAAGTTGGCAAGGA
LOC_Os05g38520
Os.9260.1.S1_at--169--5571Chr05:22514318..22514342 (25 bp)
GAAAGCTTGGCACCCACAAGAGGGC
LOC_Os05g38520
Os.9260.1.S1_at--896--6071Chr05:22514978..22515002 (25 bp)
GAGTATCTCCAAGTTCATGAAGTCC
LOC_Os05g38520
Os.9260.1.S1_at--542--5331Chr05:22514996..22515020 (25 bp)
GAAGTCCATGGCAATATTGTCTTGT
LOC_Os05g38520
Os.9260.1.S1_at--397--6051Chr05:22515022..22515046 (25 bp)
GAGTTTACTCTTGTAGAACCCTACT
LOC_Os05g38520
Os.9260.1.S1_at--172--5451Chr05:22515037..22515061 (25 bp)
GAACCCTACTACTAGAATTGCACTC
LOC_Os05g38520
Os.9260.1.S1_at--379--5211Chr05:22515051..22515075 (25 bp)
GAATTGCACTCTATTATCCAGCTAA
LOC_Os05g38520
Os.9260.1.S1_at--76--3571Chr05:22515077..22515101 (25 bp)
CATCATGGTGTTAGTTCTGTGTTAA
LOC_Os05g38520
Os.9260.1.S1_at--996--1071Chr05:22515095..22515119 (25 bp)
GTGTTAAAAACCTCCTGTCTTGTGT
LOC_Os05g38520
Target Sequence 
GGGTGACCTTTGTCAGGAACTTGATCAGGGAGGTTGCTGGATTTGCTCCCTATGAGAAGCGTATCACTGAGCTTCTCAAA
GTTGGCAAGGACAAGCGTGCACTGAAGGTGGCAAAGAGAAAGCTTGGCACCCACAAGAGGGCCAAGAAGAAGAGAGAGGA
GATGGCTGGTGTCCTCAGGAAGATGAGGTCTGGTGGCGGTCACGCTCACACCGAGAAGAAGAAATAGAGTATCTCCAAGT
TCATGAAGTCCATGGCAATATTGTCTTGTTGAGTTTACTCTTGTAGAACCCTACTACTAGAATTGCACTCTATTATCCAG
CTAAACATCATGGTGTTAGTTCTGTGTTAAAAACCTCCTGTCTTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis