Browse Element(s) Details


Os.28320.1.S1_at

Description gb:AK099608.1
DB_XREF= gi:32984817
TID=Os.28320.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.28320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013048N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048N24, full insert sequence.
FL= gb:AK099608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3871011/11lipin, N-terminal conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38690OsAffx.27228.1.S1_at11/115+22615360..22616469expressed protein
LOC_Os05g38700OsAffx.27229.1.S1_at11/115+22618262..22619611hypothetical protein
LOC_Os05g38710Os.28320.1.S1_at11/115+22625566..22630697lipin, N-terminal conserved region family protein, expressed
LOC_Os05g38710OsAffx.11471.1.S1_at1/115+22625566..22630697lipin, N-terminal conserved region family protein, expressed
LOC_Os05g38720Os.51943.1.S1_at11/115+22636077..22637822Lung seven transmembrane receptor family protein, expressed
LOC_Os05g38730Os.35152.1.S1_at11/115+22642424..22650828SAC3/GANP family protein, expressed
LOC_Os05g38740Os.12348.5.S1_x_at10/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38740Os.12348.5.S1_at9/115+22653508..22654097Histone H4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28320.1.S1_at--177--10251Chr05:22627919..22627943 (25 bp)
TTTGGTCCGAACTTCTGCACAGAAC
LOC_Os05g38710
Os.28320.1.S1_at--1100--6331Chr05:22627889..22627913 (25 bp)
GATGCTATTCCGGTTGAACACCAAG
LOC_Os05g38710
Os.28320.1.S1_at--1128--2771Chr05:22627851..22627875 (25 bp)
AAGAGATTCTCTTGGGCTGTCTCCC
LOC_Os05g38710
Os.28320.1.S1_at--105--231Chr05:22627787..22627811 (25 bp)
ATATCAAGATCCCTTCAGCGCAGTA
LOC_Os05g38710
Os.28320.1.S1_at--1010--1631Chr05:22627771..22627795 (25 bp)
AGCGCAGTAACAGTGATTCATCCGA
LOC_Os05g38710
Os.28320.1.S1_at--815--4231Chr05:22627750..22627774 (25 bp)
CCGAGGACATTTTTCTTGACACAGA
LOC_Os05g38710
Os.28320.1.S1_at--378--2151Chr05:22627730..22627754 (25 bp)
ACAGAAACTGTCTTGAGTCCAATGG
LOC_Os05g38710
Os.28320.1.S1_at--661--4591Chr05:22627653..22627677 (25 bp)
GCGAACATTAATTCCCACTAGTGAA
LOC_Os05g38710
Os.28320.1.S1_at--289--51Chr05:22627592..22627616 (25 bp)
ATTGTAACTTTTAGCTTCTCCACCA
LOC_Os05g38710
Os.28320.1.S1_at--904--1551Chr05:22627580..22627604 (25 bp)
AGCTTCTCCACCAGAGTTCTTGGAA
LOC_Os05g38710
Os.28320.1.S1_at--594--7111Chr05:22627330..22627354 (25 bp)
GTCAGACTGTCACACCAAACTGTAA
LOC_Os05g38710
Target Sequence 
TTTGGTCCGAACTTCTGCACAGAACATATTGATGCTATTCCGGTTGAACACCAAGAAACACCTACTTCAAGAGATTCTCT
TGGGCTGTCTCCCTCAAGCAGGAGATGGAGGCTTTGGAACATACCATTCAGGATATCAAGATCCCTTCAGCGCAGTAACA
GTGATTCATCCGAGGACATTTTTCTTGACACAGAAACTGTCTTGAGTCCAATGGATGAGCAAACTCCAGAGAATAATATA
AATCAGTCACCAAGAAAGCAATTTGTGCGAACATTAATTCCCACTAGTGAACAGGTGGCATCACTAAACCTGAAGGAGGG
CCAAAACATTGTAACTTTTAGCTTCTCCACCAGAGTTCTTGGAAAGCAACAGGTTGAGGCACATATTTACTTGTGGAAAT
GGAATGCTAAAATTGTCATTTCTGATGTGGATGGAACCATTACAAGGTAAAGTTCAACTTAGTATNTTTAGATGCTCAGT
CTTGTTTAATTAACAATTCAGCTAGTTATCTGTCAGACTGTCACACCAAACTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis