Browse Element(s) Details


OsAffx.15015.1.S1_at

Description tigr:9633.m03601
TID=OsAffx.15015.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3876011/11Histone H4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38720Os.51943.1.S1_at11/115+22636077..22637822Lung seven transmembrane receptor family protein, expressed
LOC_Os05g38730Os.35152.1.S1_at11/115+22642424..22650828SAC3/GANP family protein, expressed
LOC_Os05g38740Os.12348.5.S1_x_at10/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38740Os.12348.5.S1_at9/115+22653508..22654097Histone H4, putative, expressed
LOC_Os05g38750NANA5+22656487..22656882hypothetical protein
LOC_Os05g38760OsAffx.15015.1.S1_at11/115+22660704..22661267Histone H4, putative
LOC_Os05g38770Os.49683.1.S1_at11/115+22661891..22664464Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g38780OsAffx.19826.2.S1_at11/115+22668358..22669491hypothetical protein
LOC_Os05g38790OsAffx.15016.1.S1_at11/115+22672990..22675464IQ calmodulin-binding motif family protein
LOC_Os05g38800Os.53840.1.S1_at11/115+22675874..22678699PWWP domain containing protein, expressed
LOC_Os05g38810Os.22684.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed
LOC_Os05g38810Os.55770.1.S1_at11/115+22681257..22686147PWWP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0007001biological_processchromosome organization and biogenesis (sensu Eukaryota)
GO:0009414biological_processresponse to water deprivation
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15015.1.S1_at--226--2231Chr05:22660955..22660979 (25 bp)
ACAAGTGGTGCTAGGCGCCATCGGA
LOC_Os05g38760
OsAffx.15015.1.S1_at--896--491Chr05:22660936..22660960 (25 bp)
ATCGGATTGTCTTTCGCGGCTACAT
LOC_Os05g38760
OsAffx.15015.1.S1_at--601--10291Chr05:22660925..22660949 (25 bp)
TTTCGCGGCTACATCCAAGGCATCG
LOC_Os05g38760
OsAffx.15015.1.S1_at--1004--6371Chr05:22660890..22660914 (25 bp)
GATCCGACGCCTTGCAAGGAAGGGT
LOC_Os05g38760
OsAffx.15015.1.S1_at--749--2671Chr05:22660859..22660883 (25 bp)
AAGCGCATCTCAGGGTTGATCTACA
LOC_Os05g38760
OsAffx.15015.1.S1_at--975--2191Chr05:22660837..22660861 (25 bp)
ACAAAGAGACTCGTGGCGTGCTCGA
LOC_Os05g38760
OsAffx.15015.1.S1_at--1137--4791Chr05:22660818..22660842 (25 bp)
GCTCGAGATCTTCCTCAAGAATGTC
LOC_Os05g38760
OsAffx.15015.1.S1_at--935--2731Chr05:22660802..22660826 (25 bp)
AAGAATGTCATCTGCGATGCCATTA
LOC_Os05g38760
OsAffx.15015.1.S1_at--979--6351Chr05:22660787..22660811 (25 bp)
GATGCCATTACCTACACCGAGCATG
LOC_Os05g38760
OsAffx.15015.1.S1_at--230--5171Chr05:22660756..22660780 (25 bp)
GCAAGACTGTCATGGCCATGGATGT
LOC_Os05g38760
OsAffx.15015.1.S1_at--631--7991Chr05:22660737..22660761 (25 bp)
GGATGTCGTATATGCGCTCAAGCTT
LOC_Os05g38760
Target Sequence 
ACAAGTGGTGCTAGGCGCCATCGGATTGTCTTTCGCGGCTACATCCAAGGCATCGCCAAGCCGGTGATCCGACGCCTTGC
AAGGAAGGGTGGCGTGAAGCGCATCTCAGGGTTGATCTACAAAGAGACTCGTGGCGTGCTCGAGATCTTCCTCAAGAATG
TCATCTGCGATGCCATTACCTACACCGAGCATGCTCACCGCAAGACTGTCATGGCCATGGATGTCGTATATGCGCTCAAG
CTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis