Browse Element(s) Details


Os.47590.1.A1_s_at

Description gb:BX900706
DB_XREF= gi:40493321
DB_XREF=BX900706
CLONE=y740c04p3
TID=Os.47590.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47590 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188402.1 (A.thaliana) protein kinase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3908011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39010NANA5+22800592..22803611hypothetical protein
LOC_Os05g39020NANA5+22804463..22805301retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_s_at11/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.1.S1_x_at9/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_x_at8/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.4.S1_x_at1/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39040NANA5+22813027..22817860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39050Os.12348.4.S1_at11/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_x_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39060OsAffx.15019.1.S1_s_at11/115+22821181..22822863expressed protein
LOC_Os05g39070OsAffx.15020.1.S1_at9/115+22824769..22827122NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g39080Os.47590.1.A1_s_at11/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39080Os.51713.1.S1_at10/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39090Os.12685.1.S1_at11/115+22836130..22841236Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g39100OsAffx.15021.1.S1_x_at9/115+22844527..22845251hypothetical protein
LOC_Os05g39110Os.9357.1.S1_at11/115+22849528..22852649selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os05g39120Os.57399.1.S1_at11/115+22854120..22857464expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47590.1.A1_s_at--798--1351Chr05:22828081..22828105 (25 bp)
AGAGAAGATTTCCTTGCGGCGTCGC
LOC_Os05g39080
Os.47590.1.A1_s_at--960--10211Chr05:22828073..22828097 (25 bp)
TTTCCTTGCGGCGTCGCTTGCAGTG
LOC_Os05g39080
Os.47590.1.A1_s_at--743--3431Chr05:22828053..22828077 (25 bp)
CAGTGCCCCGACACCAAATTTGTTA
LOC_Os05g39080
Os.47590.1.A1_s_at--398--10311Chr05:22828026..22828050 (25 bp)
TTTCTTTCCTACCTGTTACAAATCA
LOC_Os05g39080
Os.47590.1.A1_s_at--991--5991Chr05:22827991..22828015 (25 bp)
GAGACCAACAGCCAGTGAAGCATTG
LOC_Os05g39080
Os.47590.1.A1_s_at--302--5391Chr05:22827975..22827999 (25 bp)
GAAGCATTGCAGCATCCGTGGCTCT
LOC_Os05g39080
Os.47590.1.A1_s_at--977--7531Chr05:22827958..22827982 (25 bp)
GTGGCTCTCATATGCCTATCAGTGA
LOC_Os05g39080
Os.47590.1.A1_s_at--728--591Chr05:22827947..22827971 (25 bp)
ATGCCTATCAGTGAGATGTCAACCA
LOC_Os05g39080
Os.47590.1.A1_s_at--1026--2511Chr05:22827800..22827824 (25 bp)
AACTTGCTCGTGCATGTAAATATGA
LOC_Os05g39080
Os.47590.1.A1_s_at--793--2311Chr05:22827767..22827791 (25 bp)
AAAGGTTCCTTGTTGCATATATGTA
LOC_Os05g39080
Os.47590.1.A1_s_at--468--6671Chr05:22827756..22827780 (25 bp)
GTTGCATATATGTATAGCTGTCACT
LOC_Os05g39080
Target Sequence 
AGAGAAGATTTCCTTGCGGCGTCGCTTGCAGTGCCCCGACACCAAATTTGTTAAATTTCTTTCCTACCTGTTACAAATCA
ACCCCANGAAAGAGACCAACAGCCAGTGAAGCATTGCAGCATCCGTGGCTCTCATATGCCTATCAGTGAGATGTCAACCA
NAATGTGTTTATACGGGATGGATCGNTTTTCTGAAGTTCCATTTGCNCCAGGANTTGGNTTTTCCGNTTTTTTCAGGGCA
GNCCNTGGTTGGCATCGAAACCCTGNTTTCAGAGATNAATGNNAACTTGCTCGTGCATGTAAATATGAGAAGAAGAAAAG
GTTCCTTGTTGCATATATGTATAGCTGTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47590.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis