Browse Element(s) Details


Os.12685.1.S1_at

Description gb:AK101942.1
DB_XREF= gi:32987151
TID=Os.12685.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12685 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074I19, full insert sequence.
FL= gb:AK101942.1 gb:AK059122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3909011/11Calcium-dependent protein kinase, isoform 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39040NANA5+22813027..22817860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39050Os.12348.4.S1_at11/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_x_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39060OsAffx.15019.1.S1_s_at11/115+22821181..22822863expressed protein
LOC_Os05g39070OsAffx.15020.1.S1_at9/115+22824769..22827122NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g39080Os.47590.1.A1_s_at11/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39080Os.51713.1.S1_at10/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39090Os.12685.1.S1_at11/115+22836130..22841236Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g39100OsAffx.15021.1.S1_x_at9/115+22844527..22845251hypothetical protein
LOC_Os05g39110Os.9357.1.S1_at11/115+22849528..22852649selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os05g39120Os.57399.1.S1_at11/115+22854120..22857464expressed protein
LOC_Os05g39130OsAffx.25007.2.S1_at1/115+22862782..22869989retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009738biological_processabscisic acid mediated signaling
GO:0004672molecular_functionprotein kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12685.1.S1_at--37--2951Chr05:22836528..22836552 (25 bp)
AAGGCGTCACGGCATTATTCAAGAG
LOC_Os05g39090
Os.12685.1.S1_at--873--2391Chr05:22836432..22836456 (25 bp)
AAACTTGCAGCTGGTGTTGCCCTTT
LOC_Os05g39090
Os.12685.1.S1_at--859--9151Chr05:22836397..22836421 (25 bp)
TGCGCATGTAAGTCTGGCCCTTGGA
LOC_Os05g39090
Os.12685.1.S1_at--722--10831Chr05:22836377..22836401 (25 bp)
TTGGACCCACTAAGCAGAGACCTTC
LOC_Os05g39090
Os.12685.1.S1_at--590--1351Chr05:22836362..22836386 (25 bp)
AGAGACCTTCTCCTTTTCTAATGAT
LOC_Os05g39090
Os.12685.1.S1_at--211--6951Chr05:22836273..22836297 (25 bp)
GTAGTTTTCCTGGTATCTCTGATGA
LOC_Os05g39090
Os.12685.1.S1_at--888--5091Chr05:22836245..22836269 (25 bp)
GCACGCACTGAATGCTGCACCAATA
LOC_Os05g39090
Os.12685.1.S1_at--232--10731Chr05:22836204..22836228 (25 bp)
TTGCTTGATATCTCCTTCACTGTAC
LOC_Os05g39090
Os.12685.1.S1_at--682--10511Chr05:22836189..22836213 (25 bp)
TTCACTGTACCCATGCTTGTTGTAC
LOC_Os05g39090
Os.12685.1.S1_at--911--10251Chr05:22836159..22836183 (25 bp)
TTTGTTGTTCCACTCAATGCACTTC
LOC_Os05g39090
Os.12685.1.S1_at--588--3011Chr05:22836144..22836168 (25 bp)
AATGCACTTCGTTGATCTGATGGAT
LOC_Os05g39090
Target Sequence 
AAGGCGTCACGGCATTATTCAAGAGGACGTTTCAACAGCCTTAGCATAAGGCTTATAAAGGATGGATCTGTAAAATTGGG
CAACGAGTGAAGTTGCAAACTTGCAGCTGGTGTTGCCCTTTACTACTCATCTGCGCATGTAAGTCTGGCCCTTGGACCCA
CTAAGCAGAGACCTTCTCCTTTTCTAATGATTATTTTGGTGGTAATTTAGATAGGCAGAGCCCCCCCCCCCCCCCTGATT
GGCTTACTCATGTAAGTAGTTTTCCTGGTATCTCTGATGAGGAGCACGCACTGAATGCTGCACCAATAGCTGTGCACAGT
GCACTTGCTTGATATCTCCTTCACTGTACCCATGCTTGTTGTACAATATTTTGTTGTTCCACTCAATGCACTTCGTTGAT
CTGATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis