Browse Element(s) Details


Os.51713.1.S1_at

Description gb:AK063502.1
DB_XREF= gi:32973520
TID=Os.51713.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-E09, full insert sequence.
FL= gb:AK063502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3908010/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39010NANA5+22800592..22803611hypothetical protein
LOC_Os05g39020NANA5+22804463..22805301retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_s_at11/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.1.S1_x_at9/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_x_at8/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.4.S1_x_at1/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39040NANA5+22813027..22817860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39050Os.12348.4.S1_at11/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39050Os.12348.5.S1_x_at1/115+22819929..22820611Histone H4, putative, expressed
LOC_Os05g39060OsAffx.15019.1.S1_s_at11/115+22821181..22822863expressed protein
LOC_Os05g39070OsAffx.15020.1.S1_at9/115+22824769..22827122NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g39080Os.47590.1.A1_s_at11/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39080Os.51713.1.S1_at10/115+22827706..22832498protein kinase family protein, putative, expressed
LOC_Os05g39090Os.12685.1.S1_at11/115+22836130..22841236Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g39100OsAffx.15021.1.S1_x_at9/115+22844527..22845251hypothetical protein
LOC_Os05g39110Os.9357.1.S1_at11/115+22849528..22852649selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os05g39120Os.57399.1.S1_at11/115+22854120..22857464expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51713.1.S1_at--971--3551Chr05:22829625..22829649 (25 bp)
CATCTTGGCTGAACTGTACACTGGT
LOC_Os05g39080
Os.51713.1.S1_at--826--7031NONE
GTACACTGGTGAAGTGCTCTTTCCA
NONE
Os.51713.1.S1_at--254--7311Chr05:22828959..22828983 (25 bp)
GTGCTCTTTCCAAATGAATCAGTAC
LOC_Os05g39080
Os.51713.1.S1_at--570--3131Chr05:22828930..22828954 (25 bp)
AATTCTTGCTCGGATGATAGGGACA
LOC_Os05g39080
Os.51713.1.S1_at--821--3491Chr05:22828891..22828915 (25 bp)
CATGGAAATGCTTGCACTGGGACAA
LOC_Os05g39080
Os.51713.1.S1_at--221--6491Chr05:22828866..22828890 (25 bp)
GATACCCAGAAGTACTTTACAGAAG
LOC_Os05g39080
Os.51713.1.S1_at--393--1452Chr09:2570892..2570918 (25 bp)
AGAAGACTACGACCTGTTCCACAAG
NONE
Os.51713.1.S1_at--1106--5071Chr05:22827879..22827903 (25 bp)
GCACCAGGATTTGGCTTTTCCGTTT
LOC_Os05g39080
Os.51713.1.S1_at--40--1091Chr05:22827849..22827873 (25 bp)
AGGGCAGTCCTTGGTTAGCATCGAA
LOC_Os05g39080
Os.51713.1.S1_at--695--10451Chr05:22827835..22827859 (25 bp)
TTAGCATCGAAACCCTGTTTTCCGA
LOC_Os05g39080
Os.51713.1.S1_at--269--1811Chr05:22827824..22827848 (25 bp)
ACCCTGTTTTCCGAGATGAATGCAA
LOC_Os05g39080
Target Sequence 
CATCTTGGCTGAACTGTACACTGGTGAAGTGCTCTTTCCAAATGAATCAGTACAAATAATTCTTGCTCGGATGATAGGGA
CAATTGGTCCAATTGACATGGAAATGCTTGCACTGGGACAAGATACCCAGAAGTACTTTACAGAAGACTACGACCTGTTC
CACAAGAATGAGGAGACGGATCAGTTGGAGTACTTGATCCCAGAGAAGATTTCCTTGCGGCGTCGCTTGCAGTGCCCCGA
CACCAAATTTGTTAAATTTCTTTCCTACCTGTTACAAATCAACCCCAGAAAGAGACCAACAGCCAGTGAAGCATTGCAGC
ATCCGTGGCTCTCATATGCCTATCAGTGAGATGTCAACCAAATGTGTTTATACGGGATGGATCGTTTTTCTGAAGTTCCA
TTTGCACCAGGATTTGGCTTTTCCGTTTTTTTCAGGGCAGTCCTTGGTTAGCATCGAAACCCTGTTTTCCGAGATGAATG
CAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis