Browse Element(s) Details


Os.51909.1.S1_at

Description gb:AK064247.1
DB_XREF= gi:32974265
TID=Os.51909.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51909 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-B12, full insert sequence.
FL= gb:AK103561.1 gb:AK064247.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3915011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39120Os.57399.1.S1_at11/115+22854120..22857464expressed protein
LOC_Os05g39130OsAffx.25007.2.S1_at1/115+22862782..22869989retrotransposon protein, putative, unclassified
LOC_Os05g39140Os.12242.1.S1_at11/115+22872129..22877626expressed protein
LOC_Os05g39140Os.48582.1.A1_s_at10/115+22872129..22877626expressed protein
LOC_Os05g39150Os.51909.1.S1_at11/115+22878075..22881251expressed protein
LOC_Os05g39160OsAffx.27234.2.S1_at11/115+22882724..22883992hypothetical protein
LOC_Os05g39170OsAffx.27234.1.S1_at11/115+22887046..22888595hypothetical protein
LOC_Os05g39180Os.50520.1.S1_at11/115+22891311..22894850expressed protein
LOC_Os05g39190Os.54521.1.S1_at11/115+22895418..22898968expressed protein
LOC_Os05g39200OsAffx.15023.1.S1_at10/115+22900867..22903188hypothetical protein
LOC_Os05g39210Os.56330.1.S1_at11/115+22905044..22908281expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51909.1.S1_at--548--1331Chr05:22879353..22879377 (25 bp)
AGAGGGCGATTGACAGTTCTCGTTT
LOC_Os05g39150
Os.51909.1.S1_at--144--9511Chr05:22879370..22879394 (25 bp)
TCTCGTTTGGGTTGTGCTGACTTTC
LOC_Os05g39150
Os.51909.1.S1_at--31--5531Chr05:22880069..22880093 (25 bp)
GAAAAGCAATACTCCGTCATACTCA
LOC_Os05g39150
Os.51909.1.S1_at--559--7131Chr05:22880084..22880108 (25 bp)
GTCATACTCAGACATGTCGGTTCAT
LOC_Os05g39150
Os.51909.1.S1_at--995--8871Chr05:22880965..22880989 (25 bp)
TGATGGTTTCTGACACACCTTGTGG
LOC_Os05g39150
Os.51909.1.S1_at--683--10291Chr05:22881020..22881044 (25 bp)
TTTCCTGATGAACTTTGTGGCCCCT
LOC_Os05g39150
Os.51909.1.S1_at--593--8651Chr05:22881035..22881059 (25 bp)
TGTGGCCCCTCATTTTGACAAATTC
LOC_Os05g39150
Os.51909.1.S1_at--726--2051Chr05:22881076..22881100 (25 bp)
ACTTCTCTTAGCTATGCACGAGCCA
LOC_Os05g39150
Os.51909.1.S1_at--287--5591Chr05:22881120..22881144 (25 bp)
GAAATGACTTGATTCCATCGCCAGT
LOC_Os05g39150
Os.51909.1.S1_at--774--471Chr05:22881136..22881160 (25 bp)
ATCGCCAGTTGAGCTTTGAACCGCA
LOC_Os05g39150
Os.51909.1.S1_at--15--8991Chr05:22881152..22881176 (25 bp)
TGAACCGCAGTCTAGAACAACACAT
LOC_Os05g39150
Target Sequence 
AGAGGGCGATTGACAGTTCTCGTTTGGGTTGTGCTGACTTTCCCCTCCTGCCTTGTGTACTCCCACCGTGGCTTGAATCA
AGCCAGATTCCTGAAGGGATCCATTGGAGCAAGAAGGCCAAGATGAAAAGCAATACTCCGTCATACTCAGACATGTCGGT
TCATGTAGACATAGAACTGAAGAAGTGAATTTTATCAGCTTTTGATCTCATGGGTTTCTCAAAATTGACAGACGAGGTTT
TTCTGGAGAATTAGGAGGCGAATGGTGATGGTTTCTGACACACCTTGTGGGAATNGCTGTGAAAAGTTTGGGTTTTGGGG
CTTTCCTGATGAACTTTGTGGCCCCTCATTTTGACAAATTCTGGGAAACATTTTGCNACTTCTCTTAGCTATGCACGAGC
CATGTTTATTATTATTTCAGTGAAATGACTTGATTCCATCGCCAGTTGAGCTTTGAACCGCAGTCTAGAACAACACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis