Browse Element(s) Details


Os.56330.1.S1_at

Description gb:AK109867.1
DB_XREF= gi:32995076
TID=Os.56330.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-A05, full insert sequence.
FL= gb:AK109867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3921011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39150Os.51909.1.S1_at11/115+22878075..22881251expressed protein
LOC_Os05g39160OsAffx.27234.2.S1_at11/115+22882724..22883992hypothetical protein
LOC_Os05g39170OsAffx.27234.1.S1_at11/115+22887046..22888595hypothetical protein
LOC_Os05g39180Os.50520.1.S1_at11/115+22891311..22894850expressed protein
LOC_Os05g39190Os.54521.1.S1_at11/115+22895418..22898968expressed protein
LOC_Os05g39200OsAffx.15023.1.S1_at10/115+22900867..22903188hypothetical protein
LOC_Os05g39210Os.56330.1.S1_at11/115+22905044..22908281expressed protein
LOC_Os05g39220Os.52081.1.S1_at10/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39220OsAffx.23696.1.S1_x_at1/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39230Os.8138.1.S1_at11/115+22913774..22922353expressed protein
LOC_Os05g39240Os.20364.1.S1_at11/115+22926028..22930243Ammonium transporter 2, putative, expressed
LOC_Os05g39240Os.54723.1.S1_at1/115+22926028..22930243Ammonium transporter 2, putative, expressed
LOC_Os05g39250OsAffx.4557.1.S1_s_at11/115+22930379..22931153expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56330.1.S1_at--155--1131Chr05:22906224..22906248 (25 bp)
AGTGCTCTGAGCTATGCAGCGACGT
LOC_Os05g39210
Os.56330.1.S1_at--552--5071Chr05:22906239..22906263 (25 bp)
GCAGCGACGTTTTCCCGACAGTGAG
LOC_Os05g39210
Os.56330.1.S1_at--93--9651Chr05:22906268..22906292 (25 bp)
TCAGGTGTCTTGCTTCCATGTGTGC
LOC_Os05g39210
Os.56330.1.S1_at--718--10651Chr05:22906313..22906332 (20 bp)
TTCCCGATCCCTAATGCAGGCAAGA
LOC_Os05g39210
Os.56330.1.S1_at--445--691Chr05:22907530..22907554 (25 bp)
ATGAGACGCTGGCTGACATTCTGGT
LOC_Os05g39210
Os.56330.1.S1_at--1110--7831Chr05:22907921..22907945 (25 bp)
GGTAGTTGCCAAACTCACTTTTTTG
LOC_Os05g39210
Os.56330.1.S1_at--845--10691Chr05:22908049..22908073 (25 bp)
TTGCCTGCAGACCTGTTATTCGTAG
LOC_Os05g39210
Os.56330.1.S1_at--651--5291Chr05:22908076..22908100 (25 bp)
GAATGGCGATTCTATCAGCGAGTCA
LOC_Os05g39210
Os.56330.1.S1_at--252--1631Chr05:22908092..22908116 (25 bp)
AGCGAGTCATAACCGTCACAGTTCA
LOC_Os05g39210
Os.56330.1.S1_at--396--10111Chr05:22908130..22908154 (25 bp)
TATGGATAGGTCTCTGCATGTTCTT
LOC_Os05g39210
Os.56330.1.S1_at--871--7351Chr05:22908161..22908185 (25 bp)
GTGACAGATCAATTAGGGCCTCCTT
LOC_Os05g39210
Target Sequence 
AGTGCTCTGAGCTATGCAGCGACGTTTTCCCGACAGTGAGCTCGTCAGGTGTCTTGCTTCCATGTGTGCTCCCACCGTGG
CTCGATTCTTTCCCGATCCCTAATGCAGGCAAGAACAATATGAAAAATGAGACGCTGGCTGACATTCTGGTCCGTTCAGA
CAGAGGCAAGTAAAGATGATGTTTATTAGGGTTATTAATATTAAGACAGGAATTTTGATGGATTAGGAAGCTTATAGTGG
TAGTTGCCAAACTCACTTTTTTGGGGGAAAATTTGGAGACAAGGAGAAGTTTGCTTTTAGGGGCTTGATGATAAACTATT
TTATTTTTTGGGAAAATTATGGGAGTTTCGTCAGTTATTTTGGGGTTTGCCTGCAGACCTGTTATTCGTAGTAGAATGGC
GATTCTATCAGCGAGTCATAACCGTCACAGTTCAGTAACACACTTTCTATGGATAGGTCTCTGCATGTTCTTTAGATCGT
GACAGATCAATTAGGGCCTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis