Browse Element(s) Details


Os.54521.1.S1_at

Description gb:AK105507.1
DB_XREF= gi:32990716
TID=Os.54521.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-E01, full insert sequence.
FL= gb:AK105507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3919011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39140Os.12242.1.S1_at11/115+22872129..22877626expressed protein
LOC_Os05g39140Os.48582.1.A1_s_at10/115+22872129..22877626expressed protein
LOC_Os05g39150Os.51909.1.S1_at11/115+22878075..22881251expressed protein
LOC_Os05g39160OsAffx.27234.2.S1_at11/115+22882724..22883992hypothetical protein
LOC_Os05g39170OsAffx.27234.1.S1_at11/115+22887046..22888595hypothetical protein
LOC_Os05g39180Os.50520.1.S1_at11/115+22891311..22894850expressed protein
LOC_Os05g39190Os.54521.1.S1_at11/115+22895418..22898968expressed protein
LOC_Os05g39200OsAffx.15023.1.S1_at10/115+22900867..22903188hypothetical protein
LOC_Os05g39210Os.56330.1.S1_at11/115+22905044..22908281expressed protein
LOC_Os05g39220Os.52081.1.S1_at10/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39220OsAffx.23696.1.S1_x_at1/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39230Os.8138.1.S1_at11/115+22913774..22922353expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54521.1.S1_at--852--9571Chr05:22896467..22896490 (24 bp)
TCTTGCATCGATCCGGTTAACGCCG
LOC_Os05g39190
Os.54521.1.S1_at--1124--9791Chr05:22896483..22896507 (25 bp)
TAACGCCGACGTCGTGTACATCATG
LOC_Os05g39190
Os.54521.1.S1_at--538--10251Chr05:22896556..22896580 (25 bp)
TTTGGGCTTTCTGTGCTGGATGAGC
LOC_Os05g39190
Os.54521.1.S1_at--23--7531Chr05:22896612..22896636 (25 bp)
GTGGCTTGAATCAACCCGGATCCCT
LOC_Os05g39190
Os.54521.1.S1_at--59--5131Chr05:22897573..22897597 (25 bp)
GCACACTGGCTAATTCATCTATTGG
LOC_Os05g39190
Os.54521.1.S1_at--51--8631Chr05:22898725..22898749 (25 bp)
TGGTGGTAATTGCTGAACTCTTTTT
LOC_Os05g39190
Os.54521.1.S1_at--265--6871Chr05:22898777..22898801 (25 bp)
GTTTGGTTTGTTTGTCTTTGCTGAT
LOC_Os05g39190
Os.54521.1.S1_at--837--6611Chr05:22898830..22898854 (25 bp)
GTTGTGGGAGTTTCGCCATTTCAGT
LOC_Os05g39190
Os.54521.1.S1_at--339--3591Chr05:22898846..22898870 (25 bp)
CATTTCAGTGCTCCGACTTGTTGGT
LOC_Os05g39190
Os.54521.1.S1_at--1131--5671Chr05:22898860..22898884 (25 bp)
GACTTGTTGGTCGTTCCATCAGAAT
LOC_Os05g39190
Os.54521.1.S1_at--54--4931Chr05:22898930..22898954 (25 bp)
GCTTGCATGGCATCAGTTCTGTTAC
LOC_Os05g39190
Target Sequence 
TCTTGCATCGATCCGGTTAACGCCGACGTCGTGTACATCATGGTCGGGAGCGGGCTCGTTTTGGGAGTGGATATGGAGAG
GGGGATGGGGTTTGGGCTTTCTGTGCTGGATGAGCCTGCCTGGCCGACACCCTGCGTGCTCCCGCCGTGGCTTGAATCAA
CCCGGATCCCTTCTTCTACAGAAACCCTTTTGAGCAAGAAGACCAATGTTGAAAGGAAGTCTTTGGCAGACATGCTGGTT
CGTGTAGATAGATGCTGTTAAAAATGAAGCACACTGGCTAATTCATCTATTGGGTTCATAATCTAAATGCAAGTGCTATG
ATCAATTAAGATGTTAATGGTGGTAATTGCTGAACTCTTTTTTTTTGTGAAAATCTGGGGAATGAAGAAGTTTGGTTTGT
TTGTCTTTGCTGATAAAATCAGTTAAGTCTTATTTTGGTGAGGTTGTGGGAGTTTCGCCATTTCAGTGCTCCGACTTGTT
GGTCGTTCCATCAGAATGATTCGGTTCAATCAGCATGTAATGGCTACTATAAAGTACAAACAGCTTGCATGGCATCAGTT
CTGTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis