Browse Element(s) Details


Os.48582.1.A1_s_at

Description gb:CR285289
DB_XREF= gi:44671855
DB_XREF=CR285289
CLONE=p520d02p3
TID=Os.48582.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48582 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3914010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39110Os.9357.1.S1_at11/115+22849528..22852649selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os05g39120Os.57399.1.S1_at11/115+22854120..22857464expressed protein
LOC_Os05g39130OsAffx.25007.2.S1_at1/115+22862782..22869989retrotransposon protein, putative, unclassified
LOC_Os05g39140Os.12242.1.S1_at11/115+22872129..22877626expressed protein
LOC_Os05g39140Os.48582.1.A1_s_at10/115+22872129..22877626expressed protein
LOC_Os05g39150Os.51909.1.S1_at11/115+22878075..22881251expressed protein
LOC_Os05g39160OsAffx.27234.2.S1_at11/115+22882724..22883992hypothetical protein
LOC_Os05g39170OsAffx.27234.1.S1_at11/115+22887046..22888595hypothetical protein
LOC_Os05g39180Os.50520.1.S1_at11/115+22891311..22894850expressed protein
LOC_Os05g39190Os.54521.1.S1_at11/115+22895418..22898968expressed protein
LOC_Os05g39200OsAffx.15023.1.S1_at10/115+22900867..22903188hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48582.1.A1_s_at--588--2531Chr05:22874418..22874442 (25 bp)
AACTATATCTTCAATGTCAGCAGGG
LOC_Os05g39140
Os.48582.1.A1_s_at--599--1071Chr05:22874397..22874421 (25 bp)
AGGGAGAAGGCTTGTCAATTGAACC
LOC_Os05g39140
Os.48582.1.A1_s_at--499--7071NONE
GTCAATTGAACCTGGATTCGCCTTC
NONE
Os.48582.1.A1_s_at--334--1771Chr05:22872964..22872984 (21 bp)
ACCTGGATTCGCCTTCATTGGAGAT
LOC_Os05g39140
Os.48582.1.A1_s_at--804--9311Chr05:22872956..22872980 (25 bp)
TCGCCTTCATTGGAGATTAGTCCCC
LOC_Os05g39140
Os.48582.1.A1_s_at--305--8131Chr05:22872909..22872933 (25 bp)
GGACAGTGCTTTAATCGAGTTTCAC
LOC_Os05g39140
Os.48582.1.A1_s_at--474--6831Chr05:22872891..22872915 (25 bp)
GTTTCACTTGAAGGTTAAGGGCAGT
LOC_Os05g39140
Os.48582.1.A1_s_at--895--1051Chr05:22872874..22872898 (25 bp)
AGGGCAGTGACAGTGATAGTAGTTC
LOC_Os05g39140
Os.48582.1.A1_s_at--285--6951Chr05:22872856..22872880 (25 bp)
GTAGTTCAGATGATGACATACTCAT
LOC_Os05g39140
Os.48582.1.A1_s_at--299--9811Chr05:22872831..22872855 (25 bp)
TAACGCCTGTATGGAGTTCGACTAT
LOC_Os05g39140
Os.48582.1.A1_s_at--614--6691Chr05:22872816..22872840 (25 bp)
GTTCGACTATGAGACCATTGAGCAT
LOC_Os05g39140
Target Sequence 
AACTATATCTTCAATGTCAGCAGGGAGAAGGCTTGTCAATTGAACCTGGATTCGCCTTCATTGGAGATTAGTCCCCCCAT
GCGTGGCATCTCTGTATAGGACAGTGCTTTAATCGAGTTTCACTTGAAGGTTAAGGGCAGTGACAGTGATAGTAGTTCAG
ATGATGACATACTCATTATCATTAACGCCTGTATGGAGTTCGACTATGAGACCATTGAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48582.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis