Browse Element(s) Details


Os.50520.1.S1_at

Description gb:AK121589.1
DB_XREF= gi:37991212
TID=Os.50520.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033037O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037O09, full insert sequence.
FL= gb:AK121589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3918011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39130OsAffx.25007.2.S1_at1/115+22862782..22869989retrotransposon protein, putative, unclassified
LOC_Os05g39140Os.12242.1.S1_at11/115+22872129..22877626expressed protein
LOC_Os05g39140Os.48582.1.A1_s_at10/115+22872129..22877626expressed protein
LOC_Os05g39150Os.51909.1.S1_at11/115+22878075..22881251expressed protein
LOC_Os05g39160OsAffx.27234.2.S1_at11/115+22882724..22883992hypothetical protein
LOC_Os05g39170OsAffx.27234.1.S1_at11/115+22887046..22888595hypothetical protein
LOC_Os05g39180Os.50520.1.S1_at11/115+22891311..22894850expressed protein
LOC_Os05g39190Os.54521.1.S1_at11/115+22895418..22898968expressed protein
LOC_Os05g39200OsAffx.15023.1.S1_at10/115+22900867..22903188hypothetical protein
LOC_Os05g39210Os.56330.1.S1_at11/115+22905044..22908281expressed protein
LOC_Os05g39220Os.52081.1.S1_at10/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39220OsAffx.23696.1.S1_x_at1/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39230Os.8138.1.S1_at11/115+22913774..22922353expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50520.1.S1_at--76--7791Chr05:22892435..22892459 (25 bp)
GGTGCTCTCGATCCGCTGAAAGCTA
LOC_Os05g39180
Os.50520.1.S1_at--250--8971Chr05:22892451..22892475 (25 bp)
TGAAAGCTAGTGTGGTGTACCTCAT
LOC_Os05g39180
Os.50520.1.S1_at--194--9111Chr05:22892577..22892601 (25 bp)
TGCTCCCGCCATGGCTTGAAACAAG
LOC_Os05g39180
Os.50520.1.S1_at--993--5391Chr05:22893715..22893739 (25 bp)
GAAGCGTACTTGCTAATTCATCTTT
LOC_Os05g39180
Os.50520.1.S1_at--295--1351Chr05:22894566..22894590 (25 bp)
AGAGATCCAGAGATTCCCTTTGATG
LOC_Os05g39180
Os.50520.1.S1_at--473--5331Chr05:22894639..22894663 (25 bp)
GAAGTTTGGGTTTTGCTGTGCATCT
LOC_Os05g39180
Os.50520.1.S1_at--774--7331Chr05:22894656..22894680 (25 bp)
GTGCATCTGGACTTTGCTGGTGCTA
LOC_Os05g39180
Os.50520.1.S1_at--1030--4711Chr05:22894671..22894695 (25 bp)
GCTGGTGCTACCTGTTGAATTTTGA
LOC_Os05g39180
Os.50520.1.S1_at--228--831Chr05:22894737..22894761 (25 bp)
ATGGAACTTTGTGTCCCTCATTTGA
LOC_Os05g39180
Os.50520.1.S1_at--854--5111Chr05:22894771..22894795 (25 bp)
GCAAACGTTTTGCAACTTCTCCTTG
LOC_Os05g39180
Os.50520.1.S1_at--288--3271Chr05:22894783..22894807 (25 bp)
CAACTTCTCCTTGCTGTATGTGCTA
LOC_Os05g39180
Target Sequence 
GGTGCTCTCGATCCGCTGAAAGCTAGTGTGGTGTACCTCATGATCGGCGAGGATGGTAGGCACGTTGTCGGGGTGGACTT
GGAGAAGGGGGTGATGATCGGGAGCTGTCTGCTGGAGCATCCCATCGGGCTGACACCCTGCGTGCTCCCGCCATGGCTTG
AAACAAGCCGGATCCCTTCTACAGGAACCCTTTCGAGCAAGAAGACCAATGCTGAAAGTAAGAGTTTGGGAGACATGCTG
GTTCGTGTAGATAGAGGCTGTTAAAAATGAAGCGTACTTGCTAATTCATCTTTTGGTTCCTTGAAATTTACTGGTAGAGA
TCCAGAGATTCCCTTTGATGGTAGCAGTTTCTTCAAGTACCTGAACTCTCATTTTGGGGATGCTGGGAGAAGTTTGGGTT
TTGCTGTGCATCTGGACTTTGCTGGTGCTACCTGTTGAATTTTGAGGGTTTTGATGCGAGAAATTTGAGTTTGTTGGGCT
TTACTGATGGAACTTTGTGTCCCTCATTTGACAAATTATGGCAAACGTTTTGCAACTTCTCCTTGCTGTATGTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis