Browse Element(s) Details


Os.20364.1.S1_at

Description gb:AB051864.1
DB_XREF= gi:19909967
GEN=OsAMT2;1
TID=Os.20364.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.20364 (NCBI UniGene Cluster)
DEF=Oryza sativa OsAMT2;1 mRNA for ammonium transporter, complete cds.
PROD=ammonium transporter
FL= gb:AK065288.1 gb:AB051864.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3924011/11Ammonium transporter 2, putative, expressed
LOC_Os01g427401/11Ammonium transporter 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39200OsAffx.15023.1.S1_at10/115+22900867..22903188hypothetical protein
LOC_Os05g39210Os.56330.1.S1_at11/115+22905044..22908281expressed protein
LOC_Os05g39220Os.52081.1.S1_at10/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39220OsAffx.23696.1.S1_x_at1/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39230Os.8138.1.S1_at11/115+22913774..22922353expressed protein
LOC_Os05g39240Os.20364.1.S1_at11/115+22926028..22930243Ammonium transporter 2, putative, expressed
LOC_Os05g39240Os.54723.1.S1_at1/115+22926028..22930243Ammonium transporter 2, putative, expressed
LOC_Os05g39250OsAffx.4557.1.S1_s_at11/115+22930379..22931153expressed protein
LOC_Os05g39260OsAffx.27235.1.S1_at11/115+22937448..22938032Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39270Os.46610.1.S1_x_at4/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.27066.1.A1_x_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.53292.1.S1_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.52049.1.S1_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39280NANA5+22951541..22954678retrotransposon protein, putative, unclassified
LOC_Os05g39290NANA5+22954985..22955887hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0015696biological_processammonium transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0008519molecular_functionammonium transporter activity
GO:0015398molecular_functionhigh affinity ammonium transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20364.1.S1_at--997--7392Chr05:22929732..22929756 (25 bp)
GTGATCGCGTGGAACCTCGTGGTCA
LOC_Os05g39240
Os.20364.1.S1_at--797--5331Chr05:22929878..22929902 (25 bp)
GAAGTTCGACGCGACGCGGCACGAC
LOC_Os05g39240
Os.20364.1.S1_at--873--7571Chr05:22929974..22929998 (25 bp)
GGGCGTCACCATCCAGCTCTAGGCG
LOC_Os05g39240
Os.20364.1.S1_at--743--8451Chr05:22930034..22930058 (25 bp)
TGGCCTCTAATTACACGCGCGTTTG
LOC_Os05g39240
Os.20364.1.S1_at--242--3351Chr05:22930047..22930071 (25 bp)
CACGCGCGTTTGTACTGTTTTTGGA
LOC_Os05g39240
Os.20364.1.S1_at--32--7011Chr05:22930058..22930082 (25 bp)
GTACTGTTTTTGGACGTGTTATTGT
LOC_Os05g39240
Os.20364.1.S1_at--925--5311Chr05:22930094..22930118 (25 bp)
GAAGTGAACCAACGATTGACTGCAA
LOC_Os05g39240
Os.20364.1.S1_at--176--5451Chr05:22930131..22930155 (25 bp)
GAACGCGAGAGACCAGACCACTATA
LOC_Os05g39240
Os.20364.1.S1_at--255--6351Chr05:22930172..22930196 (25 bp)
GATGCTGTAATGATGTTGATCCGAG
LOC_Os05g39240
Os.20364.1.S1_at--449--8831Chr05:22930188..22930212 (25 bp)
TGATCCGAGTTCGTTTTTCCAACAC
LOC_Os05g39240
Os.20364.1.S1_at--673--10271Chr05:22930203..22930227 (25 bp)
TTTCCAACACGATAAAGGCCGACAT
LOC_Os05g39240
Target Sequence 
GTGATCGCGTGGAACCTCGTGGTCACCACGGCCATCCTCCTCGGCATCGGCCTGTTCATCCCGCTGCGGATGCCCGACGA
GCAGCTCATGATCGGCGACGACGCGGCGCACGGCGAGGAGGCCTACGCGCTGTGGGGCGACGGCGAGAAGTTCGACGCGA
CGCGGCACGACCTGTCGAGGGGCGGCGGAGGCGGCGACAGGGACGGCCCCGCCGGCGAGCGCCTCTCCGCCCTAGGCGCC
AGGGGCGTCACCATCCAGCTCTAGGCGCGCCACGCCACGCCACGCCGCGCCGCGCCGCGGCCTGGCCTCTAATTACACGC
GCGTTTGTACTGTTTTTGGACGTGTTATTGTTTAGGAGTAGTGAAGTGAACCAACGATTGACTGCAAGGTGAAGGGTGAG
AACGCGAGAGACCAGACCACTATAGTCTATAGTACATATGGATGCTGTAATGATGTTGATCCGAGTTCGTTTTTCCAACA
CGATAAAGGCCGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis