Browse Element(s) Details


OsAffx.27235.1.S1_at

Description tigr:9633.m03652
TID=OsAffx.27235.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3926011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39230Os.8138.1.S1_at11/115+22913774..22922353expressed protein
LOC_Os05g39240Os.20364.1.S1_at11/115+22926028..22930243Ammonium transporter 2, putative, expressed
LOC_Os05g39240Os.54723.1.S1_at1/115+22926028..22930243Ammonium transporter 2, putative, expressed
LOC_Os05g39250OsAffx.4557.1.S1_s_at11/115+22930379..22931153expressed protein
LOC_Os05g39260OsAffx.27235.1.S1_at11/115+22937448..22938032Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39270Os.46610.1.S1_x_at4/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.27066.1.A1_x_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.53292.1.S1_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.52049.1.S1_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39280NANA5+22951541..22954678retrotransposon protein, putative, unclassified
LOC_Os05g39290NANA5+22954985..22955887hypothetical protein
LOC_Os05g39300OsAffx.4559.1.S1_at10/115+22961591..22963422F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27235.1.S1_at--306--5431Chr05:22937480..22937504 (25 bp)
GAACCAGGTGATGCGGTGGCGGTAC
LOC_Os05g39260
OsAffx.27235.1.S1_at--296--4551Chr05:22937542..22937566 (25 bp)
GCGCCGTGTACCTGCTGGTCGGGCT
LOC_Os05g39260
OsAffx.27235.1.S1_at--641--4711Chr05:22937611..22937635 (25 bp)
GCTGGGCGTGCCACCGGTACACGCC
LOC_Os05g39260
OsAffx.27235.1.S1_at--1098--8391Chr05:22937730..22937754 (25 bp)
GGCCTGCCGGTGACGCTGTACCGCC
LOC_Os05g39260
OsAffx.27235.1.S1_at--88--3451Chr05:22937823..22937847 (25 bp)
CAGTGCTCGATATGCATCAGCGCGC
LOC_Os05g39260
OsAffx.27235.1.S1_at--56--1131Chr05:22937824..22937848 (25 bp)
AGTGCTCGATATGCATCAGCGCGCT
LOC_Os05g39260
OsAffx.27235.1.S1_at--985--7311Chr05:22937825..22937849 (25 bp)
GTGCTCGATATGCATCAGCGCGCTG
LOC_Os05g39260
OsAffx.27235.1.S1_at--71--9111Chr05:22937826..22937850 (25 bp)
TGCTCGATATGCATCAGCGCGCTGG
LOC_Os05g39260
OsAffx.27235.1.S1_at--237--4811Chr05:22937827..22937851 (25 bp)
GCTCGATATGCATCAGCGCGCTGGT
LOC_Os05g39260
OsAffx.27235.1.S1_at--172--9391Chr05:22937829..22937853 (25 bp)
TCGATATGCATCAGCGCGCTGGTCG
LOC_Os05g39260
OsAffx.27235.1.S1_at--904--2891Chr05:22937862..22937886 (25 bp)
AAGGTGAAGGCCCTCCCGCCGTGCG
LOC_Os05g39260
Target Sequence 
GAACCAGGTGATGCGGTGGCGGTACGGGGACGTCGACGACAGCAACTTCGCGGTGCACGGCCGCGCCGTGTACCTGCTGG
TCGGGCTGCTCGTCGCCGTCGTGGTGTTCGTCGCCCTCTGCCTCTACCTCCGCTGGGCGTGCCACCGGTACACGCCCGAC
CCGGAGGCCTCCTCCTCGTCGTCGGCGGCGGGGGCGGCGGGGGCCGCAGCGGCGGCGTCGATGCACGGGCTCGACGCCGA
GGCGATCGGGGGCCTGCCGGTGACGCTGTACCGCCCGCGCGACTCCTCGTCGCCTCCCGCCGGGAAGGGCGGCGGCGGTG
GCGTCGACGACGACCAGGCGGCGCAGTGCTCGATATGCATCAGCGCGCTGGTCGCCGGCGAGAAGGTGAAGGCCCTCCCG
CCGTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis