Browse Element(s) Details


OsAffx.4559.1.S1_at

Description tigr:9633.m03656
TID=OsAffx.4559.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3930010/11F-box domain containing protein, expressed
LOC_Os11g332101/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39260OsAffx.27235.1.S1_at11/115+22937448..22938032Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g39270Os.46610.1.S1_x_at4/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.27066.1.A1_x_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.53292.1.S1_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.52049.1.S1_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39280NANA5+22951541..22954678retrotransposon protein, putative, unclassified
LOC_Os05g39290NANA5+22954985..22955887hypothetical protein
LOC_Os05g39300OsAffx.4559.1.S1_at10/115+22961591..22963422F-box domain containing protein, expressed
LOC_Os05g39310Os.4683.1.S1_at10/115+22975629..22978472Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os05g39320Os.4683.3.S1_at11/115+22982341..22985148Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os05g39330NANA5+22985889..22991180retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4559.1.S1_at--1103--5771Chr05:22962867..22963072 (25 bp)
GACGAGCTTGCCAAGCGGCAGTTCG
LOC_Os05g39300
OsAffx.4559.1.S1_at--16--2691NONE
AAGCGGCAGTTCGAGCCACAGAAGT
NONE
OsAffx.4559.1.S1_at--1162--5851Chr05:22963072..22963096 (25 bp)
GAGCCACAGAAGTACAGCGTGCTGA
LOC_Os05g39300
OsAffx.4559.1.S1_at--375--7591Chr05:22963099..22963123 (25 bp)
GGGCTATTCACCTGCGCGGTGCTGC
LOC_Os05g39300
OsAffx.4559.1.S1_at--143--7791Chr05:22963116..22963140 (25 bp)
GGTGCTGCGCTCACTGTCGCTCGGC
LOC_Os05g39300
OsAffx.4559.1.S1_at--940--1831Chr05:22963270..22963294 (25 bp)
ACGCTCGAGGCCTGCTATGAGATGG
LOC_Os05g39300
OsAffx.4559.1.S1_at--386--891Chr05:22963277..22963301 (25 bp)
AGGCCTGCTATGAGATGGCCCCGCT
LOC_Os05g39300
OsAffx.4559.1.S1_at--773--1311Chr05:22963289..22963313 (25 bp)
AGATGGCCCCGCTCTCCGTGGCAGG
LOC_Os05g39300
OsAffx.4559.1.S1_at--1089--4791Chr05:22963299..22963323 (25 bp)
GCTCTCCGTGGCAGGGCTGGCTCTC
LOC_Os05g39300
OsAffx.4559.1.S1_at--136--3472Chr11:19140263..19140284 (22 bp)
CAGGGCTGGCTCTCCGGTGCTGCCA
LOC_Os11g33210
OsAffx.4559.1.S1_at--535--4011Chr05:22963367..22963391 (25 bp)
CGTCGCCGTCGGAGCTACTACAAGC
LOC_Os05g39300
Target Sequence 
GACGAGCTTGCCAAGCGGCAGTTCGAGCCACAGAAGTACAGCGTGCTGAGGGGGCTATTCACCTGCGCGGTGCTGCGCTC
ACTGTCGCTCGGCTCCGTCCGGCTCACTCTGCCCGCGGCCATCGCCCTGCCGTCCCTCGAGACGCTGCTCCTGGCCGACG
TCACCGACCACGAGAGGAACATGCAGCGCCTCATCTCCGGCTGCCCGCGCCTCGCCGACCTGACGCTCGAGGCCTGCTAT
GAGATGGCCCCGCTCTCCGTGGCAGGGCTGGCTCTCCGGTGCTGCCATGGCCTAGACACCGTCGTCCTCGACGACATGTC
GTCGCCGTCGGAGCTACTACAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis