Browse Element(s) Details


Os.4683.1.S1_at

Description gb:U07339.1
DB_XREF= gi:476285
GEN=pdc1
TID=Os.4683.1
CNT=59
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4683 (NCBI UniGene Cluster)
DEF=Oryza sativa pyruvate decarboxylase 1 (pdc1) mRNA, complete cds.
PROD=pyruvate decarboxylase 1
FL= gb:U07339.1 gb:AK100678.1 gb:AK101272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3931010/11Pyruvate decarboxylase isozyme 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39270Os.46610.1.S1_x_at4/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.27066.1.A1_x_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.53292.1.S1_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39270Os.52049.1.S1_at1/115+22944969..22950990hypothetical protein
LOC_Os05g39280NANA5+22951541..22954678retrotransposon protein, putative, unclassified
LOC_Os05g39290NANA5+22954985..22955887hypothetical protein
LOC_Os05g39300OsAffx.4559.1.S1_at10/115+22961591..22963422F-box domain containing protein, expressed
LOC_Os05g39310Os.4683.1.S1_at10/115+22975629..22978472Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os05g39320Os.4683.3.S1_at11/115+22982341..22985148Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os05g39330NANA5+22985889..22991180retrotransposon protein, putative, unclassified
LOC_Os05g39340Os.56256.1.S1_at11/115+22995478..22997336retrotransposon protein, putative, unclassified, expressed
LOC_Os05g39350Os.23209.1.S1_at11/115+22997685..23000566expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0004737molecular_functionpyruvate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4683.1.S1_at--58--9771Chr05:22978066..22978090 (25 bp)
TAATCCCCAGTGATCTTGCTGCTCG
LOC_Os05g39310
Os.4683.1.S1_at--554--10571Chr05:22978093..22978117 (25 bp)
TTCTCAGGACGCACACTCGAAATTG
LOC_Os05g39310
Os.4683.1.S1_at--420--4111NONE
CGCACACTCGAAATTGGCTGGGCTG
NONE
Os.4683.1.S1_at--421--4731Chr05:22978117..22978141 (25 bp)
GCTGGGCTGCCAATGTCTAAGATGT
LOC_Os05g39310
Os.4683.1.S1_at--230--4391Chr05:22978125..22978149 (25 bp)
GCCAATGTCTAAGATGTGCTGCTTA
LOC_Os05g39310
Os.4683.1.S1_at--780--7311Chr05:22978140..22978164 (25 bp)
GTGCTGCTTATCATCGTCTGTGAAT
LOC_Os05g39310
Os.4683.1.S1_at--1025--3131Chr05:22978166..22978190 (25 bp)
AATTGTTTAACGCTTCTGTTTCTGT
LOC_Os05g39310
Os.4683.1.S1_at--667--4911Chr05:22978177..22978201 (25 bp)
GCTTCTGTTTCTGTATCCATTCAAA
LOC_Os05g39310
Os.4683.1.S1_at--328--6911Chr05:22978189..22978213 (25 bp)
GTATCCATTCAAAATTTTCTTAGAG
LOC_Os05g39310
Os.4683.1.S1_at--840--7011Chr05:22978228..22978252 (25 bp)
GTACATGTCGATGGGTGTTACCTAT
LOC_Os05g39310
Os.4683.1.S1_at--302--811Chr05:22978238..22978262 (25 bp)
ATGGGTGTTACCTATCCTATGATAA
LOC_Os05g39310
Target Sequence 
TAATCCCCAGTGATCTTGCTGCTCGTCTTCTCAGGACGCACACTCGAAATTGGCTGGGCTGCCAATGTCTAAGATGTGCT
GCTTATCATCGTCTGTGAATTAATTGTTTAACGCTTCTGTTTCTGTATCCATTCAAAATTTTCTTAGAGAAGAGGTTGAA
TTAGTACATGTCGATGGGTGTTACCTATCCTATGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis