Browse Element(s) Details


Os.4683.3.S1_at

Description gb:AK100501.1
DB_XREF= gi:32985710
TID=Os.4683.3
CNT=26
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4683 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0410E03.24 (P0410E03.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099J05, full insert sequence.
FL= gb:AK100501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3932011/11Pyruvate decarboxylase isozyme 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39300OsAffx.4559.1.S1_at10/115+22961591..22963422F-box domain containing protein, expressed
LOC_Os05g39310Os.4683.1.S1_at10/115+22975629..22978472Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os05g39320Os.4683.3.S1_at11/115+22982341..22985148Pyruvate decarboxylase isozyme 1, putative, expressed
LOC_Os05g39330NANA5+22985889..22991180retrotransposon protein, putative, unclassified
LOC_Os05g39340Os.56256.1.S1_at11/115+22995478..22997336retrotransposon protein, putative, unclassified, expressed
LOC_Os05g39350Os.23209.1.S1_at11/115+22997685..23000566expressed protein
LOC_Os05g39360OsAffx.10756.1.S1_x_at1/115+23004391..23004859transposon protein, putative, unclassified
LOC_Os05g39360OsAffx.8513.1.S1_s_at1/115+23004391..23004859transposon protein, putative, unclassified
LOC_Os05g39370OsAffx.27236.1.S1_at10/115+23006311..23012400hypothetical protein
LOC_Os05g39370OsAffx.28164.2.S1_at1/115+23006311..23012400hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0004737molecular_functionpyruvate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4683.3.S1_at--250--4511Chr05:22984735..22984759 (25 bp)
GCCGAATCCCCAGTGATTTTGCTAG
LOC_Os05g39320
Os.4683.3.S1_at--484--171Chr05:22984750..22984774 (25 bp)
ATTTTGCTAGCTGGTCTTCTCATGA
LOC_Os05g39320
Os.4683.3.S1_at--155--691Chr05:22984771..22984795 (25 bp)
ATGACGCACACTCGAATGCGCTAGT
LOC_Os05g39320
Os.4683.3.S1_at--247--2971Chr05:22984785..22984809 (25 bp)
AATGCGCTAGTCTGCCAATGTCCGA
LOC_Os05g39320
Os.4683.3.S1_at--797--771Chr05:22984802..22984826 (25 bp)
ATGTCCGAGATATGCTGCCCATTAT
LOC_Os05g39320
Os.4683.3.S1_at--796--4771Chr05:22984815..22984839 (25 bp)
GCTGCCCATTATCGTCTGTGAATTA
LOC_Os05g39320
Os.4683.3.S1_at--556--10811Chr05:22984841..22984865 (25 bp)
TTGTCTAATGCGTCTGCATCCAGTT
LOC_Os05g39320
Os.4683.3.S1_at--540--551Chr05:22984858..22984882 (25 bp)
ATCCAGTTAAATTTTCTCAGCCGAG
LOC_Os05g39320
Os.4683.3.S1_at--170--7911Chr05:22984907..22984931 (25 bp)
GGTTGCCCGTCTTATGATTATGTTT
LOC_Os05g39320
Os.4683.3.S1_at--1000--10171Chr05:22985074..22985098 (25 bp)
TATAGCACTATCAGACTGTCTCGTT
LOC_Os05g39320
Os.4683.3.S1_at--721--1391Chr05:22985086..22985110 (25 bp)
AGACTGTCTCGTTGTTTGCTAATCA
LOC_Os05g39320
Target Sequence 
GCCGAATCCCCAGTGATTTTGCTAGCTGGTCTTCTCATGACGCACACTCGAATGCGCTAGTCTGCCAATGTCCGAGATAT
GCTGCCCATTATCGTCTGTGAATTAATTGTCTAATGCGTCTGCATCCAGTTAAATTTTCTCAGCCGAGAGGTTGAAGTAT
TTATGTAGATGGGGTTGCCCGTCTTATGATTATGTTTGTAATTCAATATGCTTGGCATTAATGTTTTGTAAACCTGTAAT
GTATTGCGATGAAATAACATGGACGATTTGAAGGAGAAGAAAATCACATATCTAGACAATTTACTTGACCATTATAGTAC
TATCAGATTAGTTGATCATTATAGCACTATCAGACTGTCTCGTTGTTTGCTAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4683.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis