Browse Element(s) Details


OsAffx.8513.1.S1_s_at

Description gb:NM_194839.1
DB_XREF= gi:37531037
TID=OsAffx.8513.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative alternative oxidase (OSJNBa0030B02.13), mRNA.
PROD=putative alternative oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0562011/11transposon protein, putative, unclassified
LOC_Os09g155901/11F-box domain containing protein, expressed
LOC_Os10g272601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g075701/11transposon protein, putative, unclassified
LOC_Os04g467701/11transposon protein, putative, unclassified
LOC_Os02g472001/11transposon protein, putative, unclassified, expressed
LOC_Os05g393601/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05590OsAffx.20749.1.S1_at11/1110+2764618..2767273F-box domain containing protein
LOC_Os10g05600Os.56354.1.S1_at10/1110+2778783..2780822Thaumatin family protein, expressed
LOC_Os10g05610OsAffx.6584.1.S1_at11/1110+2786076..2786484hypothetical protein
LOC_Os10g05620OsAffx.8513.1.S1_s_at11/1110+2788683..2791653transposon protein, putative, unclassified
LOC_Os10g05620OsAffx.8513.2.S1_at6/1110+2788683..2791653transposon protein, putative, unclassified
LOC_Os10g05630NANA10+2797727..2797981hypothetical protein
LOC_Os10g05650OsAffx.26144.1.S1_x_at11/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05650OsAffx.26144.3.S1_s_at11/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05650OsAffx.26144.3.S1_at8/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05660NANA10+2813311..2814946Thaumatin-like protein 1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8513.1.S1_s_at--278--5951Chr10:2791498..2791522 (25 bp)
GAGCACCCACAATGTAGGCTGCCTC
LOC_Os10g05620
OsAffx.8513.1.S1_s_at--472--6931Chr10:2791485..2791509 (25 bp)
GTAGGCTGCCTCGACAGAGAGAAAA
LOC_Os10g05620
OsAffx.8513.1.S1_s_at--729--7392Chr01:22774112..22774132 (21 bp)
GTGAGGTAGCCTTCTTTATTTATTT
NONE
OsAffx.8513.1.S1_s_at--560--7871Chr10:2791415..2791439 (25 bp)
GGTTTATCAGACACCACGCGGTAGG
LOC_Os10g05620
OsAffx.8513.1.S1_s_at--1044--55910Chr09:9517823..9517846 (24 bp)
GACAAAACCACTCTGGATTGGGTCA
LOC_Os09g15590
OsAffx.8513.1.S1_s_at--2--5391Chr10:2790203..2790227 (25 bp)
GAAGAAGGCACCCTCGAAGATGAAG
LOC_Os10g05620
OsAffx.8513.1.S1_s_at--139--1295Chr05:23004372..23004395 (24 bp)
AGATGCACCTCATGACCTTCATGGA
NONE
OsAffx.8513.1.S1_s_at--1000--10051Chr10:2788994..2789018 (25 bp)
TAGTAGTGACTCCTACACCGAGTAC
LOC_Os10g05620
OsAffx.8513.1.S1_s_at--361--3231Chr10:2788949..2788973 (25 bp)
CAAGATTGAGAACGTCCCCACGCCA
LOC_Os10g05620
OsAffx.8513.1.S1_s_at--726--4014Chr05:23004690..23004744 (25 bp)
CGTCAACCATTTCGCATCGGATGTG
LOC_Os05g39360
OsAffx.8513.1.S1_s_at--488--9351Chr10:2788726..2788845 (25 bp)
TCGCATCGGATGTGCATTTCCAGGG
LOC_Os10g05620
Target Sequence 
GAGCACCCACAATGTAGGCTGCCTCGACAGAGAGAAAAAAGAGAGGGGTGAGGTAGCCTTCTTTATTTATTTATTTTTGG
ATTGGTTTATCAGACACCACGCGGTAGGACAAAACCACTCTGGATTGGGTCAAGGGGACGCAGTCGTCGGGGTAGCGGAC
GGGGTCGGTGGTGGGGGTGCCGAAGTTGATGCGGGTGGCGAGGGAGAGGAAGAAGGCACCCTCGAAGATGAAGGGGTGAC
CGTTGGTGGTGTTGATGAGGAGGCCGAGAACGAGCAGATGCACCTCATGACCTTCATGGAGGTGGCCAAGCTGAGGTGTA
TTGATGTCACGATTTTTTTCGTGGCAACAAATGATTTTTCTAGTAGTGACTCCTACACCGAGTACCTCAAGGACATCGAG
GCCGGCAAGATTGAGAACGTCCCCACGCCACCGATCGCCATCGACTACTGGCGGCTCCCTGCCGACGCCACGCTCAAGGA
CGTCGTCGTCGTTGTCTGCGCCGATGAGGCGCACCACCGCGACGTCAACCATTTCGCATCGGATGTGCATTTCCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8513.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis