Browse Element(s) Details


OsAffx.26144.3.S1_at

Description tigr:9632.m02370
TID=OsAffx.26144.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2531011/11hypothetical protein
LOC_Os06g307009/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g056508/11transposon protein, putative, Mutator sub-class
LOC_Os07g034905/11transposon protein, putative, Mutator sub-class
LOC_Os07g034005/11transposon protein, putative, Mutator sub-class
LOC_Os07g033105/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25270OsAffx.3890.1.S1_at10/114+14580445..14581313hypothetical protein
LOC_Os04g25280Os.46012.2.S1_x_at2/114+14584065..14589755retrotransposon protein, putative, unclassified
LOC_Os04g25280Os.27088.1.A1_x_at1/114+14584065..14589755retrotransposon protein, putative, unclassified
LOC_Os04g25290OsAffx.26158.2.S1_x_at11/114+14598257..14598663hypothetical protein
LOC_Os04g25290OsAffx.26158.2.S1_at11/114+14598257..14598663hypothetical protein
LOC_Os04g25290OsAffx.26158.1.S1_x_at5/114+14598257..14598663hypothetical protein
LOC_Os04g25300OsAffx.26144.1.S1_x_at8/114+14599255..14601861Zinc knuckle family protein
LOC_Os04g25310OsAffx.26144.3.S1_at11/114+14604842..14605481hypothetical protein
LOC_Os04g25310OsAffx.26144.3.S1_s_at11/114+14604842..14605481hypothetical protein
LOC_Os04g25320OsAffx.3891.1.S1_at11/114+14616090..14616530hypothetical protein
LOC_Os04g25330Os.35344.3.S1_x_at9/114+14629749..14632498transposon protein, putative, Mutator sub-class
LOC_Os04g25330Os.35344.18.S1_x_at7/114+14629749..14632498transposon protein, putative, Mutator sub-class
LOC_Os04g25330OsAffx.22940.5.S1_x_at3/114+14629749..14632498transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26144.3.S1_at--35--4233Chr10:2803717..2803741 (25 bp)
CCGTTGTACAGTGAGTGTAACTTCA
LOC_Os10g05650
OsAffx.26144.3.S1_at--1012--6112Chr10:2803705..2803729 (25 bp)
GAGTGTAACTTCAAAATTTCATCCA
LOC_Os10g05650
OsAffx.26144.3.S1_at--1141--7432Chr10:2803703..2803727 (25 bp)
GTGTAACTTCAAAATTTCATCCATT
LOC_Os10g05650
OsAffx.26144.3.S1_at--609--2253Chr10:2803693..2803716 (24 bp)
AAATTTCATCCATTAATCTGCAAGG
LOC_Os10g05650
OsAffx.26144.3.S1_at--649--10533Chr10:2803693..2803712 (20 bp)
TTCATCCATTAATCTGCAAGGTCCT
LOC_Os10g05650
OsAffx.26144.3.S1_at--863--3533Chr10:2803526..2803710 (25 bp)
CATCCATTAATCTGCAAGGTCCTGA
LOC_Os10g05650
OsAffx.26144.3.S1_at--853--9236Chr10:2803524..2803708 (25 bp)
TCCATTAATCTGCAAGGTCCTGATG
LOC_Os10g05650
OsAffx.26144.3.S1_at--333--5216Chr07:1397439..1397463 (25 bp)
GAATTTTATTATCTACTTTGATCAG
LOC_Os07g03490
OsAffx.26144.3.S1_at--542--10215Chr07:1397433..1397457 (25 bp)
TATTATCTACTTTGATCAGGGTGAC
LOC_Os07g03490
OsAffx.26144.3.S1_at--511--10156Chr10:2803210..2803295 (25 bp)
TATCTACTTTGATCAGGGTGACACA
LOC_Os10g05650
OsAffx.26144.3.S1_at--238--3735Chr07:1397427..1397451 (25 bp)
CTACTTTGATCAGGGTGACACAATT
LOC_Os07g03490
Target Sequence 
CCGTTGTACAGTGAGTGTAACTTCAAAATTTCATCCATTAATCTGCAAGGTCCTGATGATGGTAAATTCACCGCTGAGGT
ACACCATGGTGGTTTTTTTGTTGGTCAGGGTAGCAACAGGGCATATGTAGATCAAACGATAAATTGGATTGACCACTGTG
AAGCAAGAACATGGGATATTGTTTGTTTGGATGAATTTTTAGCTATGCTTGGGTATGATATGACTCCAGATTTTAAGGCT
TATTGGTTGCTCCCTGGAAAGACTCTTGAAGATGGCCTTAGGGTTATATCTACTAGGGCTGACTTTGAAGTGATGAAATC
AGTTGTGCACAAGGTTAAGAATTTTATTATCTACTTTGATCAGGGTGACACAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26144.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis